Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1005 219 6e-52 seq1894 132 6e-26 seq732 132 6e-26 >seq1005 Length=21531 Score = 219 bits (242), Expect = 6e-52 Identities = 424/618 (69%), Gaps = 16/618 (3%) Strand=Plus/Plus Query 42054 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGG 42113 |||||| || |||| | ||||| ||| || ||||| || |||| || | |||||| | Sbjct 9313 TAAACAACAGACATCCAAAATCTGTGTGAAGGCCCTCGTCCCTACAGATAAGTTCGTTTG 9372 Query 42114 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATC 42173 | || || || || ||||| || || | || || | ||| || || | ||||| || | Sbjct 9373 AGAATGTAAGGCCTGGCATGAGCCCTCTTTTCTTCAACCAGAAGATGGCAGCAAAGGAGC 9432 Query 42174 CAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC 42233 | ||||| |||| || || | | | || || ||| ||| | ||||||| | | ||| Sbjct 9433 CTGAAAAAAAGACACCCTCGATTACAGCGAATGCAGCAAGACGCTCTCCAAAGCTGGCCT 9492 Query 42234 ---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 42290 | || | |||||| ||| ||||| | ||| || | | | ||| || || ||| Sbjct 9493 CCTTATCTTCTATCCATTTTAATGCCCATTGGGCTTTGCGTCTGATACAGGGAATGTTTT 9552 Query 42291 CTATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCGATCAA 42348 | | || || || || ||| | ||||| | || ||| |||| ||||| || ||||| Sbjct 9553 CAACTGCGTTGAAAAGGTAGCTCTTTTC--TGCTTCATCCTTAATGTATGTGTCTATCAA 9610 Query 42349 AAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 42408 || |||||||| || || || || || || || ||||||||||| | | Sbjct 9611 GAGTGAGTACATTTCACTGTGGATATTCTCCATCATAATTTGGAATCCGTAGAAGCTACG 9670 Query 42409 GGCCTCGGTAACCTGTACTTCTGTACAAAATCGTT--CAGCTAAATTTTCGTTCACTATT 42466 || || | | ||| || ||| ||| ||| ||| | | | |||||| ||||||||| Sbjct 9671 TGCTTCTGGTATCTGAACCTCTTTACCAAA--GTTAAAAACAAGATTTTCATTCACTATT 9728 Query 42467 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC---GTC-CGG 42522 ||||| |||||||||||| |||| | ||||| ||||||||| |||| ||| | Sbjct 9729 CCGTCTGAGGCTGCAAAAAAGGCCAGAATGTGTTTGATAAAATATCTTTCATTGTCATTG 9788 Query 42523 TGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAA 42582 ||| ||| | ||| | | ||||| | | || ||| || ||||| | ||||| || Sbjct 9789 AGTTTGTTT-TCCCAGTGCTCAATATCATGCGCTAGATCAACCTCTTCGGCAGTCCAGAA 9847 Query 42583 TGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAAC 42642 |||||||| |||||||| ||||| ||||| || ||| |||| ||||| || || || Sbjct 9848 CGATGCTTCGGCCTTTTTGTACATGTTCCAAATCTCAGTGTATTTGATTGGAAACATCAC 9907 Query 42643 AAATCTATTTGGATTTGG 42660 |||||| || || ||||| Sbjct 9908 AAATCTGTTGGGGTTTGG 9925 >seq1894 Length=33155 Score = 132 bits (146), Expect = 6e-26 Identities = 410/632 (65%), Gaps = 2/632 (0%) Strand=Plus/Plus Query 72001 GACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 72060 ||||| ||||| | || ||||| ||||| || ||||| |||||||| | | ||| Sbjct 22549 GACCATTCTCCGTTTTCCAAAACTCGCTTCATGAACAGATCGGGAATCCACATTCC-ATA 22607 Query 72061 -AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 72119 || | ||| | | | | ||| || || || |||||| || ||| ||||| | Sbjct 22608 GAACAAATCACGTGCGCGGTTCTCTTCCTTACCGTGATTCTTCTTCAGACTAAGGAAATC 22667 Query 72120 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCC 72179 | | ||| | ||||| || ||||| ||||| || | | || || | |||||||| Sbjct 22668 AAACACATCTGCGTGCCATGGCTCCAAATATATAGCAAATGCACCTGGTCTCTTGTTTCC 22727 Query 72180 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 72239 ||||| || | ||||| || || | || | || | || |||||| | | ||||| Sbjct 22728 ACCCTGGTCAACATATCTGGCAGTCTGGTTGAATACACGCAGCATTGGTACTACTCCATT 22787 Query 72240 GGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAG 72299 |||| ||||| || || | || || ||| |||| | || ||| | | Sbjct 22788 AGATGTTCCATTTGTTCCTGCAATGTAAGATCCTGTGGCTCTGATGTTGTGTACACTCAA 22847 Query 72300 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 72359 || ||||| ||||| ||| || || | || || | |||| ||||||||||| || Sbjct 22848 TCCAATTCCACCTGCTGATTTTGATATCATGGCACACTGCTTTAGTGTATCATAGATACC 22907 Query 72360 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 72419 |||||| |||||||| |||| || | ||| || || | ||| | || | || Sbjct 22908 CTCTATGCTATCATCACTCATTGCCAGCAAAAAGCACGATGAGAGTTGTGGCCGGTTTGT 22967 Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 72479 ||||| ||||||| || || || || || ||||| | |||| | || || Sbjct 22968 TCCCGAGTTAAATAGTGTTGGTGATGCATGTGTAAATAGCCGCTGCGACATCATGTTATA 23027 Query 72480 CGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACAT 72539 || || || |||| || || || | |||||||| | ||| | ||| || | Sbjct 23028 TGTTTCTATTGCTGCCTCAATGTCTTCTCCGTGTATTCCAAGACTGACTCTCATCAAAAG 23087 Query 72540 ATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599 || ||| ||||| || || | ||| |||| | |||||||||| || || | || Sbjct 23088 ATACTGTGGTCTCTCTACCACTTTGCCGTTTACTCTCAACAAGTATGAGCGCTCGAGTGT 23147 Query 72600 TTTAAAACCAAAATAGTTGTATGAAAAGTCTC 72631 ||| ||||| ||||||||||| ||| |||| Sbjct 23148 TTTGAAACCGAAATAGTTGTACCCAAAATCTC 23179 >seq732 Length=14862 Score = 132 bits (146), Expect = 6e-26 Identities = 410/632 (65%), Gaps = 2/632 (0%) Strand=Plus/Plus Query 72001 GACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 72060 ||||| ||||| | || ||||| ||||| || ||||| |||||||| | | ||| Sbjct 9266 GACCATTCTCCGTTTTCCAAAACTCGCTTCATGAACAGATCGGGAATCCACATTCC-ATA 9324 Query 72061 -AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 72119 || | ||| | | | | ||| || || || |||||| || ||| ||||| | Sbjct 9325 GAACAAATCACGTGCGCGGTTCTCTTCCTTACCGTGATTCTTCTTCAGACTAAGGAAATC 9384 Query 72120 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCC 72179 | | ||| | ||||| || ||||| ||||| || | | || || | |||||||| Sbjct 9385 AAACACATCTGCGTGCCATGGCTCCAAATATATAGCAAATGCACCTGGTCTCTTGTTTCC 9444 Query 72180 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 72239 ||||| || | ||||| || || | || | || | || |||||| | | ||||| Sbjct 9445 ACCCTGGTCAACATATCTGGCAGTCTGGTTGAATACACGCAGCATTGGTACTACTCCATT 9504 Query 72240 GGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAG 72299 |||| ||||| || || | || || ||| |||| | || ||| | | Sbjct 9505 AGATGTTCCATTTGTTCCTGCAATGTAAGATCCTGTGGCTCTGATGTTGTGTACACTCAA 9564 Query 72300 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 72359 || ||||| ||||| ||| || || | || || | |||| ||||||||||| || Sbjct 9565 TCCAATTCCACCTGCTGATTTTGATATCATGGCACACTGCTTTAGTGTATCATAGATACC 9624 Query 72360 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 72419 |||||| |||||||| |||| || | ||| || || | ||| | || | || Sbjct 9625 CTCTATGCTATCATCACTCATTGCCAGCAAAAAGCACGATGAGAGTTGTGGCCGGTTTGT 9684 Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 72479 ||||| ||||||| || || || || || ||||| | |||| | || || Sbjct 9685 TCCCGAGTTAAATAGTGTTGGTGATGCATGTGTAAATAGCCGCTGCGACATCATGTTATA 9744 Query 72480 CGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACAT 72539 || || || |||| || || || | |||||||| | ||| | ||| || | Sbjct 9745 TGTTTCTATTGCTGCCTCAATGTCTTCTCCGTGTATTCCAAGACTGACTCTCATCAAAAG 9804 Query 72540 ATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599 || ||| ||||| || || | ||| |||| | |||||||||| || || | || Sbjct 9805 ATACTGTGGTCTCTCTACCACTTTGCCGTTTACTCTCAACAAGTATGAGCGCTCGAGTGT 9864 Query 72600 TTTAAAACCAAAATAGTTGTATGAAAAGTCTC 72631 ||| ||||| ||||||||||| ||| |||| Sbjct 9865 TTTGAAACCGAAATAGTTGTACCCAAAATCTC 9896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671122807425040