Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq492 91.5 1e-13 >seq492 Length=46864 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||||| |||| ||||| ||||| || ||||| || || Sbjct 26689 CCACCACGCAGACGAAGTACTAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAA 26748 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| ||||| || || || |||| |||||||| || || || || Sbjct 26749 AGAGTTCGTCCA-TCTTCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGG 26807 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||||| || | | ||| | || || | ||| || || Sbjct 26808 AATCCCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCTGAGGGCTCGAC 26867 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | |||||||| ||||| ||||||||||| || |||||| Sbjct 26868 CTCGAGTGTAATTGTCTTGCCTGTCAAAGTTTTTACGAAAATCTGCATA 26916 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| ||||| ||||| || ||||| || || Sbjct 26917 CCACCACGCAGACGAAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAA 26976 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| ||||| || || || |||| |||||||| || || || || Sbjct 26977 AGGGTTCGTCCA-TCTTCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGG 27035 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || ||| || ||| | | ||| | || || | ||| || || Sbjct 27036 AATTCCTTCCTTATCCTGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGAC 27095 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | |||||||| ||||| ||||||||||| || |||||| Sbjct 27096 CTCGAGTGTAATTGTCTTGCCTGTCAAAGTTTTTACGAAAATCTGCATA 27144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507002016173280