Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq492 109 4e-19 seq182 109 4e-19 >seq492 Length=46864 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||| ||||| || || ||||| || ||||| || || ||| ||| | ||||| Sbjct 26707 ACTAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGAGTTCGTCCATCTTCA 26766 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || || ||| | || | |||||||||||| |||||| ||||| ||||| Sbjct 26767 AGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATCCCTTCCTTGTCCTGG 26826 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| || |||| |||||||| || || || | ||||| || || Sbjct 26827 ATTTTAGCCTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTCTTG 26886 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||||| ||||||||| ||||| |||||| Sbjct 26887 CCTGTCAAAGTTTTTACGAAAATCTGCATA 26916 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| || || ||||| || ||||| || || || ||| | ||||| Sbjct 27163 ACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGGGTTCGTCCATCTTCA 27222 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || || ||| | || | |||||||||||| |||||||||||| || || | Sbjct 27223 AGTTGCTTTCCTGCGAAGATAAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTATCCTGA 27282 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| || || |||| |||||||| || || || | ||||| || || Sbjct 27283 ATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTCTTG 27342 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||||||| |||||||||||||| |||||||| Sbjct 27343 CCTGTCAAGGTTTTTACAAAAATCTGCATATT 27374 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| || || ||||| || ||||| || || || ||| | ||||| Sbjct 26935 ACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGGGTTCGTCCATCTTCA 26994 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || || ||| | || | |||||||||||| |||||||||||| || || | Sbjct 26995 AGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTATCCTGA 27054 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| || || |||| |||||||| || || || | ||||| || || Sbjct 27055 ATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTCTTG 27114 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||||| ||||||||| ||||| |||||| Sbjct 27115 CCTGTCAAAGTTTTTACGAAAATCTGCATA 27144 >seq182 Length=36121 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || | || || || || || ||||| || ||| | | | | ||||||| Sbjct 35300 AACCAAGTGCAATGTAGACTCCTTCTGGATGTTATAGTCGGACAAAGTGCGTCCGTCTTC 35241 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||||||| || || | ||||| |||||||| || ||||||||| || ||||| Sbjct 35240 TAATTGTTTTCCTGCAAAAATCAATCGTTGTTGATCTGGTGGAATTCCCTCCTTGTCCTG 35181 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| ||| |||| ||||||||| | || || || | ||| ||||| || Sbjct 35180 GATCTTAGCCTTAACATTTTCGATGGTATCGGAAGGCTCGACCTCAAGGGTGATGGTCTT 35121 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| |||| ||| || |||||||| ||||| Sbjct 35120 ACCGGTCAAAGTCTTAACAAAAATCTGCAT 35091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362170574928714