Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1005 176 4e-39 >seq1005 Length=21531 Score = 176 bits (194), Expect = 4e-39 Identities = 545/834 (65%), Gaps = 11/834 (1%) Strand=Plus/Plus Query 12881 TTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTT 12940 || ||||| ||||| ||||| || | | ||||| | |||||||| ||| || || Sbjct 9054 TTCTCAAAGAAGTTGGTTTTGCCCTGCATTGAAATCATATCCATAAAGCTGAATGGGTTG 9113 Query 12941 TTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCT 13000 | | |||| ||| || |||| | ||| | || || ||| || |||||||| || Sbjct 9114 GTTGTGTTGTAGTGTTTGTTCAACCCAAGTTCAACTAGCAGTCTATCGGCAACAAATTCA 9173 Query 13001 ATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTT 13060 ||||| || ||| | | ||||||||| || | || |||| || |||||| Sbjct 9174 ATGTATTGACACATGAGCACTTGGTTCATTCCAATAAGCGAGACTGGCAATGCATCTGTT 9233 Query 13061 AAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTC-TTATTACGTTCTCTAA 13119 ||||| | || ||| || ||| ||||| | || ||| ||| ||| | |||| | Sbjct 9234 AAAAACTCTTGTTCAATGCTAACGGCTTCTGTGACAATG-CTCAAGATTTTTTCCTCTGA 9292 Query 13120 TGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATC 13179 ||| || || | | |||||| || |||| ||||||| ||| | || || || Sbjct 9293 TGGTTTTCTTTGCAGGTACCTAAACAACAGACATCCAAAATCTGTGTGAAGGCCCTCGTC 9352 Query 13180 TCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCA 13239 |||| || || |||||||| ||||| || || ||||| ||||||| ||| || | ||| Sbjct 9353 CCTACAGATAAGTTCGTTTGAGAATGTAAGGCCTGGCATGAGCCCTCTTTTCTTCAACCA 9412 Query 13240 AAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAA 13299 || || |||||||| || || |||||||| | || || | | | || || || | ||| Sbjct 9413 GAAGATGGCAGCAAAGGAGCCTGAAAAAAAGACACCCTCGATTACAGCGAATGC-AGCAA 9471 Query 13300 -CCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTT 13358 | || ||| | | | ||| |||||||| ||| ||||| | ||||| Sbjct 9472 GACGCTCTCCAAAGCTGGCCTCCTTATCTTCTATCCATTTTAATGCCCATTGGGCTTTGC 9531 Query 13359 GTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttC--CTTACTGTC 13416 || | | ||| || ||||| | |||||| || | || | ||||| ||| || Sbjct 9532 GTCTGATACAGGGAATGTTTTCAACTGCGTTGAAAAGGTAGCTCTTTTCTGCTT--CATC 9589 Query 13417 TAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTAT 13476 ||| || || |||||||| | |||||||| || ||||| |||||| || Sbjct 9590 CTTAATGTATGTGTCTATCAAGAGTGAGTACATTTCACTGTGGATATTCTCCATCATAAT 9649 Query 13477 TTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGC 13536 |||||| || || || | | || |||| || |||||| || ||| | | Sbjct 9650 TTGGAATCCGTAGAAGCTACGTGCTTCTGGTATCTGAACCTCTTTACCAAAGTTAAAAAC 9709 Query 13537 TAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAA 13596 | ||||| || ||||| ||||| || |||||||| || || ||||| || ||||| Sbjct 9710 AAGATTTTCATTCACTATTCCGTCTGAGGCTGCAAAAAAGGCCAGAATGTGTTTGATAAA 9769 Query 13597 ttttttttCGTTTTC--TGA-CAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTAC 13653 | | |||| || || ||| ||| ||| | || ||| | | || ||| || Sbjct 9770 ATATCTTTCATTGTCATTGAGTTTGTTTTCCCAGTGCTCAATATCATGCGCTAGATCAAC 9829 Query 13654 CTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATC 13707 ||| || | ||||| || || || | ||||| || ||||| |||| || || Sbjct 9830 CTCTTCGGCAGTCCAGAACGATGCTTCGGCCTTTTTGTACATGTTCCAAATCTC 9883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430972136423508