Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1005 172 1e-37 seq492 172 1e-37 >seq1005 Length=21531 Score = 172 bits (190), Expect = 1e-37 Identities = 398/590 (67%), Gaps = 30/590 (5%) Strand=Plus/Minus Query 268691 AACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAA 268750 ||||| | ||||||||||| |||||||| | | ||| || |||| ||||||||| Sbjct 9922 AACCCCAACAGATTTGTGATGTTTCCAATCAAATACACTGAGATTTGGAACATGTACAAA 9863 Query 268751 CAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC-TTAATAGA 268809 |||||| || || || ||||||| ||||| || ||||| | |||| || | Sbjct 9862 AAGGCCGAAGCATCGTTCTGGACTGCCGAAGAGGTTGATCTAGCGCATGATATTGAGCAC 9803 Query 268810 TTGGAAAA---ATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTT 268866 | |||||| | | || || | |||||| ||||| | ||||| || ||||| Sbjct 9802 TGGGAAAACAAACTCAATGACA-ATGAAAGATATTTTATCAAACACATTCTGGCCTTTTT 9744 Query 268867 TGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACA 268926 ||||| || || || || || |||||||| || || || || ||||||| || Sbjct 9743 TGCAGCCTCAGACGGAATAGTGAATGAAAATCTTGTTTTTAACTTTGGTAAAGAGGTTCA 9684 Query 268927 GATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGA 268986 ||| || ||||| | | || ||||||||||| || || || ||||| || || Sbjct 9683 GATACCAGAAGCACGTAGCTTCTACGGATTCCAAATTATGATGGAGAATATCCACAGTGA 9624 Query 268987 GATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGA-CTA- 269044 |||||| || || ||||| || || || | ||| | | |||||||| ||| Sbjct 9623 AATGTACTCACTCTTGATAGACACATACATTAAGGATGA-----AGCAGAAAAGAGCTAC 9569 Query 269045 -TTTTCTTCTA---TGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAA 269100 ||||| | ||| ||| || |||| | ||| ||| | ||||||| | || Sbjct 9568 CTTTTCAACGCAGTTGAAAAC-ATTCCCTGTATCAGACGCAAAGCCCAATGGGCATTAAA 9510 Query 269101 ATGGATAAACGATA-----GCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTA 269155 ||||||| | |||| || || || ||||| | | | ||| || ||||||| Sbjct 9509 ATGGATAGAAGATAAGGAGGCCAGCTTT--GGAGAGCGTCTTGCTGCATT---CGCTGTA 9455 Query 269156 ---GAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGC 269212 || ||| | || ||||| || || ||||| || ||||| ||||||||||||||||| Sbjct 9454 ATCGAGGGTGTCTTTTTTTCAGGCTCCTTTGCTGCCATCTTCTGGTTGAAGAAAAGAGGG 9395 Query 269213 CTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGG 269262 || |||||||| | || ||||| |||||| | || | |||||||| || Sbjct 9394 CTCATGCCAGGCCTTACATTCTCAAACGAACTTATCTGTAGGGACGAGGG 9345 >seq492 Length=46864 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| | || | ||||| |||||||| || |||||||| || || |||| || || Sbjct 27159 AAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGGGTTCGTCCATC 27218 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||| ||||| || || || || | ||||| || || || |||||||| ||||| Sbjct 27219 TTCAAGTTGCTTTCCTGCGAAGATAAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTATC 27278 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| ||||| || ||||| | |||||| || || ||||| |||||||| || Sbjct 27279 CTGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGT 27338 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTACAGTATT 104574 ||| || || | ||||||||||| |||||||| ||| || ||| || Sbjct 27339 CTTGCCTGTCAAGGTTTTTACAAAAATCTGCATATTGGGTCTAGTCTT 27386 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| | || | ||||| |||||||| || |||||||| || || |||| || || Sbjct 26931 AAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGGGTTCGTCCATC 26990 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||| ||||| || || || || | ||||| || || || |||||||| ||||| Sbjct 26991 TTCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTATC 27050 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| ||||| || ||||| | |||||| || || ||||| |||||||| || Sbjct 27051 CTGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGT 27110 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || | |||||||| || |||||||| Sbjct 27111 CTTGCCTGTCAAAGTTTTTACGAAAATCTGCAT 27143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151369574021432