Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1416 125 1e-24 seq849 125 1e-24 seq397 107 3e-19 >seq1416 Length=24132 Score = 125 bits (138), Expect = 1e-24 Identities = 193/270 (71%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | ||| ||| |||| |||||||||||||| ||||| ||||| || Sbjct 4829 GCCAAGCGTCACAGAAAGAT-TCTAAGAGACAACATCCAAGGAATAACCAAACCAGCCAT 4771 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | || |||||||||||||| ||||||||| |||| ||| | |||| ||||||| Sbjct 4770 TAGAAGACTTGCTCGTCGTGGTGGTGTCAAGCGTATCTCCGGACTTATCTACGAAGAGAC 4711 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | ||| | ||| ||| | | | || || || ||| | || ||||| Sbjct 4710 CAGAACCGTTCTCAAGTCATTCTTGGAAAATGTCATTAGAGACGCTGTAACATACACCGA 4651 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||||| ||||||||||| |||||||| | || || || ||||| | ||||| Sbjct 4650 ACACGCAAAACGAAAGACTGTCACATCCATGGACGTTGTGTACGCTCTGAAAAGACAAGG 4591 Query 16672 CCGTAAGATT-TATGGTTTTGGAAGTTAAT 16700 | || ||| || |||||||| | |||| Sbjct 4590 AAG-AACATTGTACGGTTTTGGTGGATAAT 4562 >seq849 Length=34559 Score = 125 bits (138), Expect = 1e-24 Identities = 193/270 (71%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | ||| ||| |||| |||||||||||||| ||||| ||||| || Sbjct 19304 GCCAAGCGTCACAGAAAGAT-TCTAAGAGACAACATCCAAGGAATAACCAAACCAGCCAT 19362 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | || |||||||||||||| ||||||||| |||| ||| | |||| ||||||| Sbjct 19363 TAGAAGACTTGCTCGTCGTGGTGGTGTCAAGCGTATCTCCGGACTTATCTACGAAGAGAC 19422 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | ||| | ||| ||| | | | || || || ||| | || ||||| Sbjct 19423 CAGAACCGTTCTCAAGTCATTCTTGGAAAATGTCATTAGAGACGCTGTAACATACACCGA 19482 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||||| ||||||||||| |||||||| | || || || ||||| | ||||| Sbjct 19483 ACACGCAAAACGAAAGACTGTCACATCCATGGACGTTGTGTACGCTCTGAAAAGACAAGG 19542 Query 16672 CCGTAAGATT-TATGGTTTTGGAAGTTAAT 16700 | || ||| || |||||||| | |||| Sbjct 19543 AAG-AACATTGTACGGTTTTGGTGGATAAT 19571 >seq397 Length=14276 Score = 107 bits (118), Expect = 3e-19 Identities = 186/268 (69%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | ||| ||| |||| |||||||||||||| ||||||||||| || Sbjct 7967 GCCAAGCGTCACAGAAAGAT-TCTAAGAGACAACATCCAAGGAATAACCAAGCCAGCCAT 8025 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | || |||||||||||||| ||||||||| |||| ||| | |||| ||||||| Sbjct 8026 TAGAAGACTTGCTCGTCGTGGTGGTGTCAAGCGTATCTCCGGACTTATCTACGAAGAGAC 8085 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | ||| | ||| ||| | | | |||||| || || || || || || Sbjct 8086 CAGAACCGTTCTCAAGTCATTCTTGGAAAACGTTATTAGAGACGCCGTCACATACACTGA 8145 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| || || || |||||| | || ||||| | || | ||||| Sbjct 8146 ACACGCCAAGAGAAAGACAGTTACATCTATGGATGTTGTATATGCTCTTAAGAGACAAGG 8205 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||| ||| | ||| Sbjct 8206 AAGAACTTTGTACGGTTTCGGAGGATAA 8233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073413444122