Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq182 138 1e-27 seq492 105 6e-18 seq845 86.0 5e-12 seq462 86.0 5e-12 >seq182 Length=36121 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||||||||| ||||| |||||||| || |||| ||||| || || | | Sbjct 35090 GATGCAGATTTTTGTTAAGACTTTGACCGGTAAGACCATCACCCTTGAGGTCGAGCCTTC 35149 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||||| | || || | || || || || ||||||||||| |||||||| ||||| Sbjct 35150 CGATACCATCGAAAATGTTAAGGCTAAGATCCAGGACAAGGAGGGAATTCCACCAGATCA 35209 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 |||||| | || ||||| || ||||| ||||| || ||||| | ||||| || || Sbjct 35210 ACAACGATTGATTTTTGCAGGAAAACAATTAGAAGACGGACGCACTTTGTCCGACTATAA 35269 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| || || || || || | || || ||| | || |||| || ||| Sbjct 35270 CATCCAGAAGGAGTCTACATTGCACTTGGTTCTCCGTCTGCGTGGTGGT 35318 >seq492 Length=46864 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| |||||||| ||||| || || || || || | || || || || || || Sbjct 27374 AATATGCAGATTTTTGTAAAAACCTTGACAGGCAAGACAATTACACTCGAGGTCGAGCCC 27315 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || | ||||| || ||||| || ||||| || |||||||| || Sbjct 27314 TCAGATACCATTGAAAACGTCAAAGCCAAGATTCAGGATAAGGAAGGAATTCCACCAGAC 27255 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||||||||||| || || || || || | || ||| || ||| | || || || Sbjct 27254 CAACAACGTCTTATCTTCGCAGGAAAGCAACTTGAAGATGGACGAACCCTTTCAGACTAT 27195 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| || || | || || || | || |||| || ||| Sbjct 27194 AACATCCAGAAAGAGTCTACTCTTCACTTGGTACTTCGTCTGCGTGGTGGT 27144 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||||| || || || || | || || || || || || | Sbjct 26915 ATGCAGATTTTCGTAAAAACTTTGACAGGCAAGACAATTACACTCGAGGTCGAGCCCTCA 26856 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| ||||| || |||||||| || |||||||| || ||| Sbjct 26855 GATACCATTGAAAACGTCAAGGCTAAAATCCAGGACAAGGAAGGGATTCCACCAGACCAA 26796 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || || || | || ||| || || | || || || ||| Sbjct 26795 CAACGTCTCATCTTCGCAGGAAAGCAACTTGAAGATGGACGAACTCTTTCAGACTATAAC 26736 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| || || | || ||||| | || |||| || ||| Sbjct 26735 ATCCAGAAAGAGTCTACTCTTCACTTAGTACTTCGTCTGCGTGGTGGT 26688 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||||| || || || || | || || || || || || | Sbjct 27143 ATGCAGATTTTCGTAAAAACTTTGACAGGCAAGACAATTACACTCGAGGTCGAGCCCTCA 27084 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | ||||| || ||||| || ||||| || |||||||| || ||| Sbjct 27083 GATACCATTGAAAACGTCAAAGCCAAGATTCAGGATAAGGAAGGAATTCCACCAGACCAA 27024 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || || || | || ||| || ||| | || || || ||| Sbjct 27023 CAACGTCTCATCTTCGCAGGAAAGCAACTTGAAGATGGACGAACCCTTTCAGACTATAAC 26964 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| || || | || || || | || |||| || ||| Sbjct 26963 ATCCAGAAAGAGTCTACTCTTCACTTGGTACTTCGTCTGCGTGGTGGT 26916 >seq845 Length=10035 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | |||||||| || | || || || || || || | Sbjct 5209 ATGCAGATCTTCGTAAAGACACTTACCGGTAAGACAATTACCCTCGAGGTTGAGCCCTCA 5268 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| ||| || || |||||||| || |||||||| |||||| Sbjct 5269 GATACTATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAA 5328 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || || || || | |||||| || || | || || || ||| Sbjct 5329 CAACGATTGATTTTCGCAGGAAAGCAACTCGAGGATGGTCGTACATTGTCAGACTATAAC 5388 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| || || || Sbjct 5389 ATCCAAAAGGAGTCTAC 5405 >seq462 Length=10693 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | |||||||| || | || || || || || || | Sbjct 5237 ATGCAGATCTTCGTAAAGACACTTACCGGTAAGACAATTACCCTCGAGGTTGAGCCCTCA 5296 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| ||| || || |||||||| || |||||||| |||||| Sbjct 5297 GATACTATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAA 5356 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || || || || | |||||| || || | || || || ||| Sbjct 5357 CAACGATTGATTTTCGCAGGAAAGCAACTCGAGGATGGTCGTACATTGTCAGACTATAAC 5416 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| || || || Sbjct 5417 ATCCAAAAGGAGTCTAC 5433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419718004440010