Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq492 149 1e-30 seq182 147 5e-30 seq845 125 2e-23 seq462 125 2e-23 seq1005 105 2e-17 >seq492 Length=46864 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | |||||| | |||| || ||||| ||||| |||||||| | Sbjct 26917 CCACCACGCAGACGAAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAA 26976 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| | ||| |||||||||||||| ||||| ||||| ||| Sbjct 26977 AGGGTTCGTCCATCTTCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGA 27036 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| |||||||| || || ||||| |||||||| || | ||| | || || Sbjct 27037 ATTCCTTCCTTATCCTGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACC 27096 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| || |||| ||| || ||||| |||||||| Sbjct 27097 TCGAGTGTAATTGTCTTGCCTGTCAAAGTTTTTACGAAAATCTGCAT 27143 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | |||||| | |||| || ||||| ||||| |||||||| | Sbjct 26689 CCACCACGCAGACGAAGTACTAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAA 26748 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| | ||| |||||||||||||| ||||| ||||| ||| Sbjct 26749 AGAGTTCGTCCATCTTCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGA 26808 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||||||||| || || |||||||| || | ||| | || || Sbjct 26809 ATCCCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCTGAGGGCTCGACC 26868 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| || |||| ||| || ||||| |||||||| Sbjct 26869 TCGAGTGTAATTGTCTTGCCTGTCAAAGTTTTTACGAAAATCTGCAT 26915 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | |||||| | |||| || ||||| ||||| |||||||| | Sbjct 27145 CCACCACGCAGACGAAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAA 27204 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| | ||| |||||||||||||| ||||| ||||| ||| Sbjct 27205 AGGGTTCGTCCATCTTCAAGTTGCTTTCCTGCGAAGATAAGACGTTGTTGGTCTGGTGGA 27264 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| |||||||| || || ||||| |||||||| || | ||| | || || Sbjct 27265 ATTCCTTCCTTATCCTGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACC 27324 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| || |||| || || || || |||||||| Sbjct 27325 TCGAGTGTAATTGTCTTGCCTGTCAAGGTTTTTACAAAAATCTGCAT 27371 >seq182 Length=36121 Score = 147 bits (162), Expect = 5e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| |||||||||| | ||||||||||||||||||||||||||||| || Sbjct 35281 TCCTTCTGGATGTTATAGTCGGACAAAGTGCGTCCGTCTTCTAATTGTTTTCCTGCAAAA 35222 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| || |||||| ||| ||||| || || |||||||| || || || || ||| Sbjct 35221 ATCAATCGTTGTTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATTT 35162 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||| | || || || || ||||| ||||| ||||||| |||||| || Sbjct 35161 TCGATGGTATCGGAAGGCTCGACCTCAAGGGTGATGGTCTTACCGGTCAAAGTCTTAACA 35102 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 35101 AAAATCTGCAT 35091 >seq845 Length=10035 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| |||||||| | | || || || || || | ||| ||||||||||| Sbjct 5399 TCCTTTTGGATGTTATAGTCTGACAATGTACGACCATCCTCGAGTTGCTTTCCTGCGAAA 5340 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| || |||||| ||| |||||||| || |||||||| || || || || ||| Sbjct 5339 ATCAATCGTTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTT 5280 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| | || || ||||| || || ||||| ||||| || ||||| ||| Sbjct 5279 TCAATAGTATCTGAGGGCTCAACCTCGAGGGTAATTGTCTTACCGGTAAGTGTCTTTACG 5220 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 5219 AAGATCTGCATT 5208 >seq462 Length=10693 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| |||||||| | | || || || || || | ||| ||||||||||| Sbjct 5427 TCCTTTTGGATGTTATAGTCTGACAATGTACGACCATCCTCGAGTTGCTTTCCTGCGAAA 5368 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| || |||||| ||| |||||||| || |||||||| || || || || ||| Sbjct 5367 ATCAATCGTTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTT 5308 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| | || || ||||| || || ||||| ||||| || ||||| ||| Sbjct 5307 TCAATAGTATCTGAGGGCTCAACCTCGAGGGTAATTGTCTTACCGGTAAGTGTCTTTACG 5248 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 5247 AAGATCTGCATT 5236 >seq1005 Length=21531 Score = 105 bits (116), Expect = 2e-17 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 268461 GTTTCCCATTCAATATCATGATCTGTGGAACATGTACAAGAAGGCAGTGGCAACCTTTTG 268520 |||||| || |||| ||| | |||||||||||||| ||||| | ||| | || || Sbjct 9902 GTTTCCAATCAAATACACTGAGATTTGGAACATGTACAAAAAGGCCGAAGCATCGTTCTG 9843 Query 268521 GACCACCGAGGAAGTTCCTCTTAACGCA-GACGTTGCAGACTGGCGTGAGAAACTGAACA 268579 ||| |||| || ||| || || |||| || ||| ||||| | ||||| || Sbjct 9842 GACTGCCGAAGAGGTTGATC-TAGCGCATGATATTGAGCACTGGGAAAACAAACTCAATG 9784 Query 268580 ACGATGAACGACACTTCATCAAACATATTCTGGGGTTCTTTGCAGGCTCCGACGGTATCG 268639 || ||||| || | || |||||||| ||||||| || ||||||| ||| ||||| || | Sbjct 9783 ACAATGAAAGATATTTTATCAAACACATTCTGGCCTTTTTTGCAGCCTCAGACGGAATAG 9724 Query 268640 TGATGGAAAATCTTCAGACAAACTTTGGTGTCGAAGTGATGGCACCAGAGGCACG 268694 ||| ||||||||| ||||||||| || || | |||||| ||||| Sbjct 9723 TGAATGAAAATCTTGTTTTTAACTTTGGTAAAGAGGTTCAGATACCAGAAGCACG 9669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179624866614812