Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1005 100 6e-16 >seq1005 Length=21531 Score = 100 bits (110), Expect = 6e-16 Identities = 548/859 (64%), Gaps = 23/859 (3%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 || || ||| | || | || || ||| | ||||| || ||||| | ||| | || ||| Sbjct 9901 TTTCCAATCAAATACACTGAGATTTGGAACATGTACAAAAAGGCCGAAGCATCGTTCTGG 9842 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGCGAGAAACTCAATGA 242993 || |||| || ||| ||| | |||| || | | ||||| | ||||||||||| Sbjct 9841 ACTGCCGAAGAGGTTGATCT-AGCGCATGATATTGAGCACTGGGAAAACAAACTCAATGA 9783 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 | | ||| | |||| |||||||||||||| | ||||| |||| ||| || || || || Sbjct 9782 CAATGAAAGATATTTTATCAAACACATTCTGGCCTTTTTTGCAGCCTCAGACGGAATAGT 9723 Query 243054 GATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 243113 || |||||||| |||||| || || || | | ||||| ||||| || Sbjct 9722 GAATGAAAATCTTGTTTTTAACTTTGGTAAAGAGGTTCAGATACCAGAAGCACGTAGCTT 9663 Query 243114 TTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTC-TTCTT-ATC 243171 || | | ||||| | | || |||||| ||| ||| | ||| |||| || Sbjct 9662 CTACGGATTCCAAATTATGATGGAGAATATCCACAGTGA--AATGTACTCACTCTTGATA 9605 Query 243172 GACGCGCTTATTTCAGATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAAAACATT 243231 ||| | ||| |||||| ||| | | | |||||| |||| | ||||||||| Sbjct 9604 GACACATACATTAAGGATGAAGCAGAAAAGAGCTACCTTTTCAACGCAGTTGAAAACATT 9545 Query 243232 CCGGCGGT-TCATA-ACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAA----A 243285 || | || ||| | ||| || ||||||| || ||| ||||| | ||| Sbjct 9544 CC--CTGTATCAGACGCAAAGCCCAATGGGCATTAAAATGGATAGAA---GATAAGGAGG 9490 Query 243286 TCA--TTTGCTGAGCGTCTCGTCGC-CTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGG 243342 || |||| |||||||| | || | | ||| | || ||| ||| |||| | || Sbjct 9489 CCAGCTTTGGAGAGCGTCTTGCTGCATTCGCTGT-AATCGAGGGT-GTCTTTTTTTCAGG 9432 Query 243343 AGTTTCTGC-GCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTC 243401 | ||| |||||||| ||| || ||| | ||| | ||||| ||||| | || Sbjct 9431 CTCCTTTGCTGCCATCTTCTGGTTGAAGAAAAGAGGGCTCATGCCAGGCCTTACATTCTC 9372 Query 243402 TAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTC 243461 ||||| | ||| || | ||||||||||||||| | | || || || ||| | Sbjct 9371 AAACGAACTTATCTGTAGGGACGAGGGCCTTCACACAGATTTTGGATGTCTGTTGTTTAG 9312 Query 243462 AAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGA 243521 | || || | || | | || |||| || || |||||||||| ||| Sbjct 9311 GTACCTGCAAAGAAAACCATCAGAGGAAAAAATCTTGAGCATTGTCACAGAAGCCGTTAG 9252 Query 243522 AAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGA 243581 | ||| | || || | || || | ||| | ||||||||| |||||| | Sbjct 9251 CATTGAACAAGAGTTTTTAACAGATGCATTGCCAGTCTCGCTTATTGGAATGAACCAAGT 9192 Query 243582 ACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGA 243641 |||||| | || ||||| ||||| || ||||| | | | | | ||||| | | Sbjct 9191 GCTCATGTGTCAATACATTGAATTTGTTGCCGATAGACTGCTAGTTGAACTTGGGTTGAA 9132 Query 243642 GAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAA 243701 ||| |||||| | | ||||| || ||||||||| | ||||| | || || || Sbjct 9131 CAAACACTACAACACAACCAACCCATTCAGCTTTATGGATATGATTTCAATGCAGGGCAA 9072 Query 243702 AACTAACTTCTTCGAAAAG 243720 ||| |||||||| || ||| Sbjct 9071 AACCAACTTCTTTGAGAAG 9053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102852388709900