Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq492 109 4e-19 seq182 107 1e-18 seq845 87.8 1e-12 seq462 87.8 1e-12 >seq492 Length=46864 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || || ||||| ||||| ||||| || ||||| || || Sbjct 27145 CCACCACGCAGACGAAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAA 27204 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | ||||| | ||| || || ||| | || | ||| |||||||| |||| Sbjct 27205 AGGGTTCGTCCATCTTCAAGTTGCTTTCCTGCGAAGATAAGACGTTGTTGGTCTGGTGGA 27264 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || ||| ||| ||| || |||| || ||||| || || Sbjct 27265 ATTCCTTCCTTATCCTGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACC 27324 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||||| || || ||||||| |||||||||||||| |||||||| Sbjct 27325 TCGAGTGTAATTGTCTTGCCTGTCAAGGTTTTTACAAAAATCTGCATATT 27374 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 26689 CCACCACGCAGACGAAGTACTAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAA 26748 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| ||| | ||||| | ||| || || ||| | || | ||| |||||||| |||| Sbjct 26749 AGAGTTCGTCCATCTTCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGA 26808 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||||| || || |||| || ||||| || || Sbjct 26809 ATCCCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCTGAGGGCTCGACC 26868 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||| || || ||||||| ||||||||| ||||| |||||| Sbjct 26869 TCGAGTGTAATTGTCTTGCCTGTCAAAGTTTTTACGAAAATCTGCATA 26916 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || || ||||| ||||| ||||| || ||||| || || Sbjct 26917 CCACCACGCAGACGAAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAA 26976 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | ||||| | ||| || || ||| | || | ||| |||||||| |||| Sbjct 26977 AGGGTTCGTCCATCTTCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGA 27036 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || ||| ||| ||| || |||| || ||||| || || Sbjct 27037 ATTCCTTCCTTATCCTGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACC 27096 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||| || || ||||||| ||||||||| ||||| |||||| Sbjct 27097 TCGAGTGTAATTGTCTTGCCTGTCAAAGTTTTTACGAAAATCTGCATA 27144 >seq182 Length=36121 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| || || | ||||| || || || ||||| || ||| Sbjct 35317 CCACCACGCAGACGGAGAACCAAGTGCAATGTAGACTCCTTCTGGATGTTATAGTCGGAC 35258 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | |||||||||||||||| || || | ||||| || ||||| || |||| Sbjct 35257 AAAGTGCGTCCGTCTTCTAATTGTTTTCCTGCAAAAATCAATCGTTGTTGATCTGGTGGA 35198 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| |||||||| || || || ||| |||| || |||||| | || || Sbjct 35197 ATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATTTTCGATGGTATCGGAAGGCTCGACC 35138 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| ||||| |||| ||| || |||||||| ||||| Sbjct 35137 TCAAGGGTGATGGTCTTACCGGTCAAAGTCTTAACAAAAATCTGCAT 35091 >seq845 Length=10035 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAATTGTTTGC 15037 ||||| || ||||| ||||| || || ||| ||| || | || || | ||| || | Sbjct 5405 GTAGACTCCTTTTGGATGTTATAGTC--TGACAATGTACGACCATCCTCGAGTTGCTTTC 5348 Query 15038 CAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTTGCTT 15096 | ||| | ||||| || ||||| || |||||||||||||||||| || ||||| Sbjct 5347 CTGCGAAAATCAATCGTTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGC-C 5289 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 || ||| |||| |||||||| || || || | |||||| || ||||| || || Sbjct 5288 TTGACATTTTCAATAGTATCTGAGGGCTCAACCTCGAGGGTAATTGTCTTACCGGTAAGT 5229 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || ||||| || || ||||| Sbjct 5228 GTCTTTACGAAGATCTGCAT 5209 >seq462 Length=10693 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAATTGTTTGC 15037 ||||| || ||||| ||||| || || ||| ||| || | || || | ||| || | Sbjct 5433 GTAGACTCCTTTTGGATGTTATAGTC--TGACAATGTACGACCATCCTCGAGTTGCTTTC 5376 Query 15038 CAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTTGCTT 15096 | ||| | ||||| || ||||| || |||||||||||||||||| || ||||| Sbjct 5375 CTGCGAAAATCAATCGTTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGC-C 5317 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 || ||| |||| |||||||| || || || | |||||| || ||||| || || Sbjct 5316 TTGACATTTTCAATAGTATCTGAGGGCTCAACCTCGAGGGTAATTGTCTTACCGGTAAGT 5257 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || ||||| || || ||||| Sbjct 5256 GTCTTTACGAAGATCTGCAT 5237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357383488932890