Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq492 109 5e-19 seq845 104 2e-17 seq462 104 2e-17 seq182 93.3 4e-14 seq1894 91.5 1e-13 seq732 91.5 1e-13 >seq492 Length=46864 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || || || ||||| ||||| || | |||| ||| || | ||| Sbjct 27169 TGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGGGTTCGTCCATCTTCAAGTTGC 27228 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||||||| | || | ||||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 27229 TTTCCTGCGAAGATAAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTATCCTGAATCTTG 27288 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| ||| | ||| || || | |||||| ||||| |||| || ||||| || Sbjct 27289 GCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTCTTGCCTGTC 27348 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | |||||||||||||| ||||| Sbjct 27349 AAGGTTTTTACAAAAATCTGCAT 27371 >seq845 Length=10035 Score = 104 bits (114), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195 |||| || || ||||||||||| ||||| || |||| | | || ||| || | || Sbjct 5411 TGCAAAGTAGACTCCTTTTGGATGTTATAGTC--TGACAATGTACGACCATCCTCGAGTT 5354 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 | ||||||||| | ||||||||||| || || || ||||| ||||| || || || || | Sbjct 5353 GCTTTCCTGCGAAAATCAATCGTTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCT 5294 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 || |||| ||| | || || || | ||| || ||||| |||| || || |||| Sbjct 5293 TTGCCTTGACATTTTCAATAGTATCTGAGGGCTCAACCTCGAGGGTAATTGTCTTACCGG 5234 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| || || ||||| Sbjct 5233 TAAGTGTCTTTACGAAGATCTGCAT 5209 >seq462 Length=10693 Score = 104 bits (114), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195 |||| || || ||||||||||| ||||| || |||| | | || ||| || | || Sbjct 5439 TGCAAAGTAGACTCCTTTTGGATGTTATAGTC--TGACAATGTACGACCATCCTCGAGTT 5382 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 | ||||||||| | ||||||||||| || || || ||||| ||||| || || || || | Sbjct 5381 GCTTTCCTGCGAAAATCAATCGTTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCT 5322 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 || |||| ||| | || || || | ||| || ||||| |||| || || |||| Sbjct 5321 TTGCCTTGACATTTTCAATAGTATCTGAGGGCTCAACCTCGAGGGTAATTGTCTTACCGG 5262 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| || || ||||| Sbjct 5261 TAAGTGTCTTTACGAAGATCTGCAT 5237 >seq182 Length=36121 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || || ||||| ||||| ||||| ||| | || || || |||||| Sbjct 35293 TGCAATGTAGACTCCTTCTGGATGTTATAGTCGGACAAAGTGCGTCCGTCTTCTAATTGT 35234 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 |||||||| | ||||||||||| || || || ||||| || || || || || || || Sbjct 35233 TTTCCTGCAAAAATCAATCGTTGTTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTA 35174 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | ||| | ||| ||||||| |||||| || || || | || || ||||| Sbjct 35173 GCCTTAACATTTTCGATGGTATCGGAAGGCTCGACCTCAAGGGTGATGGTCTTACCGGTC 35114 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 | ||| || |||||||| |||||| Sbjct 35113 AAAGTCTTAACAAAAATCTGCATC 35090 >seq1894 Length=33155 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 123598 CACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCA 123657 ||||| | ||||| || ||||| |||||| | |||||||| || |||||||| || | | Sbjct 22405 CACAAATAGAAACAGGCACGCCATACATGTTGTACAAAGATGCGTGCAACAGCAAGTCAA 22346 Query 123658 ATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 | ||| ||| |||| |||||||| | || || | || | || || | ||||||| Sbjct 22345 ACCAGCAGAACCTGGGCACAATAAAGAGCAGCAACTTGTGTACGGAGATAGTGGAATACA 22286 Query 123718 GCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT 123757 | | || ||||||| |||||||||||||| || || Sbjct 22285 CTGCACCTGACGAAGTGGCTGTGTGTAATTTGGCATCAAT 22246 >seq732 Length=14862 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 123598 CACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCA 123657 ||||| | ||||| || ||||| |||||| | |||||||| || |||||||| || | | Sbjct 9122 CACAAATAGAAACAGGCACGCCATACATGTTGTACAAAGATGCGTGCAACAGCAAGTCAA 9063 Query 123658 ATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 | ||| ||| |||| |||||||| | || || | || | || || | ||||||| Sbjct 9062 ACCAGCAGAACCTGGGCACAATAAAGAGCAGCAACTTGTGTACGGAGATAGTGGAATACA 9003 Query 123718 GCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT 123757 | | || ||||||| |||||||||||||| || || Sbjct 9002 CTGCACCTGACGAAGTGGCTGTGTGTAATTTGGCATCAAT 8963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451992159821840