Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq492 188 2e-42 seq117 95.1 3e-14 >seq492 Length=46864 Score = 188 bits (208), Expect = 2e-42 Identities = 164/204 (80%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| |||||||| || || || || || | |||||||| |||||||| || || Sbjct 26712 GTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGAGTTCGTCCATCTTCAAGTTG 26771 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| ||||||||||| || |||||||||||||| ||||| ||||| ||||| || ||||| Sbjct 26772 CTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATCCCTTCCTTGTCCTGGATTTT 26831 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| |||||||| || || || || || || |||| ||||| ||||| Sbjct 26832 AGCCTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTCTTGCCTGT 26891 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||||||||||||||| | ||||| Sbjct 26892 CAAAGTTTTTACGAAAATCTGCAT 26915 Score = 174 bits (192), Expect = 3e-38 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| |||||||| || || || || || | ||| |||| |||||||| || || Sbjct 26940 GTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGGGTTCGTCCATCTTCAAGTTG 26999 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| ||||||||||| || |||||||||||||| ||||| ||||| || || ||||| || Sbjct 27000 CTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTATCCTGAATCTT 27059 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||| |||||||| || || || || || || |||| ||||| ||||| Sbjct 27060 GGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTCTTGCCTGT 27119 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||||||||||||||| | ||||| Sbjct 27120 CAAAGTTTTTACGAAAATCTGCAT 27143 Score = 170 bits (188), Expect = 4e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| |||||||| || || || || || | ||| |||| |||||||| || || Sbjct 27168 GTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGGGTTCGTCCATCTTCAAGTTG 27227 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| |||||||||||||| |||||||||||||| ||||| ||||| || || ||||| || Sbjct 27228 CTTTCCTGCGAAGATAAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTATCCTGAATCTT 27287 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||| |||||||| || || || || || || |||| ||||| ||||| Sbjct 27288 GGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTCTTGCCTGT 27347 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| |||||||| || | ||||| Sbjct 27348 CAAGGTTTTTACAAAAATCTGCAT 27371 >seq117 Length=39708 Score = 95.1 bits (104), Expect = 3e-14 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 125524 CTTCCAAAGAAACACGGCAGGGGAGGACAATCTGCTTTGCGTTTTGAGAGACTTCGAAAA 125583 ||||||||||| ||||| || ||||| || || || | ||||| ||| | || | Sbjct 9921 CTTCCAAAGAAGCACGGAAGAGGAGGTCAGTCAGCACTTCGTTTCTCCAGATTGAGAGAG 9980 Query 125584 GAAAAGAGACACAACTATTTGAGGAAAGTCGCAGAGAATGCAACTCA-ATGTTTTTTGCA 125642 |||||| ||||||||||| || | ||||| || || | || || |||||| ||||| Sbjct 9981 GAAAAGCGACACAACTATGTGCGTAAAGTGGCGGAAACAGCTGTGCAGATGTTTATTGCA 10040 Query 125643 AGACAACAAGTGCAACGTCATTGGGATTGTCATTGCTGGATCGGCAGAGTTCAAAACAAA 125702 || ||||| |||||||| ||| | | ||||||| || || || ||||| ||| | Sbjct 10041 GGA-GACAAGATCAACGTCACAGGGTTGATTCTTGCTGGTTCAGCTGACTTCAAGACAGA 10099 Query 125703 GCTTCTGGAA-TCTGACCTTTTCGACCAAAGACTTCGAACAAAAGTCTTG 125751 || | || || ||| | || |||| | ||||| |||| |||| || Sbjct 10100 -TTTGTCCAAGTCAGACATGTTTGACCCACGACTTGCCACAAGAGTCATG 10148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109453823434718