Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq492 116 2e-21 seq182 86.0 4e-12 >seq492 Length=46864 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || |||||||| ||||||||||| |||||| ||||| |||| || Sbjct 27163 ACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGGGTTCGTCCATCTTCA 27222 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || ||||| || || || || ||||| |||||| | || | || ||||| || | Sbjct 27223 AGTTGCTTTCCTGCGAAGATAAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTATCCTGA 27282 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||||| | | || | || || ||| || |||| || || || || Sbjct 27283 ATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTCTTG 27342 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || | || || ||||| ||||||||||| Sbjct 27343 CCTGTCAAGGTTTTTACAAAAATCTGCATATT 27374 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || |||||||| ||||||||||| |||||| ||||| |||| || Sbjct 26935 ACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGGGTTCGTCCATCTTCA 26994 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || ||||| || || || || ||||| |||||| | || | || ||||| || | Sbjct 26995 AGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTATCCTGA 27054 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||||| | | || | || || ||| || |||| || || || || Sbjct 27055 ATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTCTTG 27114 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||| || || || ||||||||| Sbjct 27115 CCTGTCAAAGTTTTTACGAAAATCTGCATA 27144 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 || ||||||| || |||||||| ||||||||||| ||||| ||||| |||| || Sbjct 26707 ACTAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGAGTTCGTCCATCTTCA 26766 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || ||||| || || || || ||||| |||||| | || | ||| |||||||| Sbjct 26767 AGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATCCCTTCCTTGTCCTGG 26826 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || |||||| | | || | || || ||| || |||| || || || || Sbjct 26827 ATTTTAGCCTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTCTTG 26886 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||| || || || ||||||||| Sbjct 26887 CCTGTCAAAGTTTTTACGAAAATCTGCATA 26916 >seq182 Length=36121 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||| || ||||| ||||||||||| || | | ||| | || || Sbjct 35300 AACCAAGTGCAATGTAGACTCCTTCTGGATGTTATAGTCGGACAAAGTGCGTCCGTCTTC 35241 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 | |||||||| ||||| || | |||||| || ||| | || | ||||||||||| Sbjct 35240 TAATTGTTTTCCTGCAAAAATCAATCGTTGTTGATCTGGTGGAATTCCCTCCTTGTCCTG 35181 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| || || | | || | || | ||| || || | ||| ||||| || Sbjct 35180 GATCTTAGCCTTAACATTTTCGATGGTATCGGAAGGCTCGACCTCAAGGGTGATGGTCTT 35121 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | |||||| ||||| |||||||| Sbjct 35120 ACCGGTCAAAGTCTTAACAAAAATCTGCAT 35091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324625869053712