Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1005 262 4e-65 seq1894 178 1e-39 seq732 178 1e-39 >seq1005 Length=21531 Score = 262 bits (290), Expect = 4e-65 Identities = 612/906 (68%), Gaps = 19/906 (2%) Strand=Plus/Plus Query 18656 TCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCT 18715 ||||||| || || || || || | ||| | || |||||||| || ||||| |||| Sbjct 9019 TCATTACACCTGCCTTCTGGTAATCTGAAACCTTCTTCTCAAAGAAGTTGGTTTTGCCCT 9078 Query 18716 CTAATGATATACAT-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAAT 18774 | ||| || ||| |||||||| ||||| || || || || ||| || || Sbjct 9079 GCATTGAAAT-CATATCCATAAAGCTGAATGGGTTGGTTGTGTTGTAGTGTTTGTTCAAC 9137 Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCAT-ATCACA 18833 || | ||| | ||| |||||||| || ||||||| ||| ||| || || ||| | ||| Sbjct 9138 CCAAGTTCAACTAGCAGTCTATCGGCAACAAATTCAATGTAT-TGA-CA-CATGAGCACT 9194 Query 18834 A--TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTT 18891 |||||||| || | || || | ||||||||| | ||| |||||||| || | Sbjct 9195 TGGTTCATTCCAATAAGCGAGACTGGCAATGCATCTGTTAAAAACTCTTGTTCAATGCTA 9254 Query 18892 ACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATA---GAAGATGT 18948 || || |||| | ||| | | ||| | | ||| | | || | | | || | Sbjct 9255 ACGGCTTCTGTGACAAT-GCT-CAAGATTTT-TTCCTCTGATGGTTTTCTTTGCAGGTAC 9311 Query 18949 TTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTA 19008 |||||| || |||| ||||||| || || |||||||| |||| || | ||| || Sbjct 9312 CTAAACAACAGACATCCAAAATCTGTGTGAAGGCCCTCGTCCCTACAGATAAGTTCGTTT 9371 Query 19009 GAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT 19068 || ||||| | || ||||| || |||||||| || |||||||| || | |||||| || Sbjct 9372 GAGAATGTAAGGCCTGGCATGAGCCCTCTTTTCTTCAACCAGAAGATGGCAGCAAAGGAG 9431 Query 19069 CCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCA 19128 || ||||| || | ||| || | | | || || ||| | || | |||||| | || || Sbjct 9432 CCTGAAAAAAAGACACCCTCGATTACAGCGAATGCAGCAAGACGCTCTCCAAAGCTGGCC 9491 Query 19129 TCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTC 19188 || |||| | |||||||| | |||||| | || || | | | ||| || || | Sbjct 9492 TCCTTATCTTCTATCCATTTTAATGCCCATTGGGCTTTGCGTCTGATACAGGGAATGTTT 9551 Query 19189 TCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAAT 19248 || | | || || || || | || || ||| |||| |||| |||||||| Sbjct 9552 TCAACTGCGTTGAAAAGGTAGCTCTTTTCTGCTTCATCCTTAATGTATGTGTCTATCAAG 9611 Query 19249 AAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTT 19308 | ||||||||| || ||||| || || || || |||||||| || | | | Sbjct 9612 AGTGAGTACATTTCACTGTGGATATTCTCCATCATAATTTGGAATCCGTAGAAGCTACGT 9671 Query 19309 GCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCA 19368 ||||||| |||||| || || ||| ||| | || | ||||||||| |||||||| Sbjct 9672 GCTTCTGGTATCTGAACCTCTTTACCAAAGTTAAAAACAAGATTTTCATTCACTATTCCG 9731 Query 19369 TCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA- 19427 || ||||||||||| || | | ||||| ||||||| | |||||| || || | Sbjct 9732 TCTGAGGCTGCAAAAAAGGCCAGAATGTGTTTGATAAAATATCTTTCAT-TGTCATTGAG 9790 Query 19428 --TGTATT-CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGA 19484 ||| || ||| | | |||||| | | || ||| || ||||| | ||||| || || Sbjct 9791 TTTGTTTTCCCAGTGCTCAATATCATGCGCTAGATCAACCTCTTCGGCAGTCCAGAACGA 9850 Query 19485 AGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 || || || ||||| ||||||||||| || ||| |||| || ||||| || ||||| Sbjct 9851 TGCTTCGGCCTTTTTGTACATGTTCCAAATCTCAGTGTATTTGATTGGAAACATCACAAA 9910 Query 19545 TCTATT 19550 ||| || Sbjct 9911 TCTGTT 9916 >seq1894 Length=33155 Score = 178 bits (196), Expect = 1e-39 Identities = 365/540 (68%), Gaps = 2/540 (0%) Strand=Plus/Plus Query 48264 TCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGT 48323 ||||| || || |||| | || || ||| || || | | ||| || |||||||| Sbjct 22630 TCTTCCTTACCGTGATTCTTCTTCAGACTAAGGAAATCAAACACATCTGCGTGCCATGGC 22689 Query 48324 TCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCA 48383 || |||||||| || | | ||||||||| || || || || || || | |||||||||| Sbjct 22690 TCCAAATATATAGCAAATGCACCTGGTCTCTTGTTTCCACCCTGGTCAACATATCTGGCA 22749 Query 48384 GTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAA 48443 || | ||| | || | | |||||| || | ||||| ||| | ||||| ||||| | | Sbjct 22750 GTCTGGTTGAATACACGCAGCATTGGTACTACTCCATTAGATGTTCCATTTGTTCCTGCA 22809 Query 48444 ATATAACTTCCACTAGCTCTTATATT-ACTAATTGAAATACCTATACCACCTGCCATTTT 48502 || ||| ||| | ||||| || || || ||| || || |||||||| ||| Sbjct 22810 ATGTAAGATCCTGTGGCTCTGATGTTGTGTACACTCAAT-CCAATTCCACCTGCTGATTT 22868 Query 48503 AGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCAT 48562 ||||| | |||||| | || || |||||||| || || ||||| |||||||| |||| Sbjct 22869 TGATATCATGGCACACTGCTTTAGTGTATCATAGATACCCTCTATGCTATCATCACTCAT 22928 Query 48563 ATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGG 48622 | | ||| || || | ||| || | ||||| || ||||||| |||||| Sbjct 22929 TGCCAGCAAAAAGCACGATGAGAGTTGTGGCCGGTTTGTTCCCGAGTTAAATAGTGTTGG 22988 Query 48623 AGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTAT 48682 |||||||| |||| || || | || ||||||||||| || | | || || Sbjct 22989 TGATGCATGTGTAAATAGCCGCTGCGACATCATGTTATATGTTTCTATTGCTGCCTCAAT 23048 Query 48683 ATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAAT 48742 || | ||||| || | | || | ||| || | ||| || ||||| || || | Sbjct 23049 GTCTTCTCCGTGTATTCCAAGACTGACTCTCATCAAAAGATACTGTGGTCTCTCTACCAC 23108 Query 48743 TTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 |||| |||| | |||| | ||||| || | |||||| ||||| ||||||||||| Sbjct 23109 TTTGCCGTTTACTCTCAACAAGTATGAGCGCTCGAGTGTTTTGAAACCGAAATAGTTGTA 23168 Score = 86.0 bits (94), Expect = 7e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 46982 AGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAA 47041 |||||| || |||| || | || | ||| || || ||||| |||||||| ||||| | Sbjct 21267 AGTAAATTTGATTGCATCAGCAGCAGGTTTGGTGCGCAAATAGTACATACCGGTCTTGAG 21326 Query 47042 ACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAAT 47101 ||| |||| || |||||||||||||| || | ||| || | || | || Sbjct 21327 ACCCTTTTTCCAGCCGTAGAAATGCATACTTGTCAGTTTTTGGTAGTTTGGATTGTCCAT 21386 Query 47102 ATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAA 47161 ||||| || |||||||| ||| |||||||| ||||| | ||| || |||| || || Sbjct 21387 GTGAATGTTCAGAGATTGTGACTGGTCAATAAAGGCACCACGATCGGCAGCCAAGTCCAA 21446 Query 47162 AA 47163 || Sbjct 21447 AA 21448 >seq732 Length=14862 Score = 178 bits (196), Expect = 1e-39 Identities = 365/540 (68%), Gaps = 2/540 (0%) Strand=Plus/Plus Query 48264 TCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGT 48323 ||||| || || |||| | || || ||| || || | | ||| || |||||||| Sbjct 9347 TCTTCCTTACCGTGATTCTTCTTCAGACTAAGGAAATCAAACACATCTGCGTGCCATGGC 9406 Query 48324 TCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCA 48383 || |||||||| || | | ||||||||| || || || || || || | |||||||||| Sbjct 9407 TCCAAATATATAGCAAATGCACCTGGTCTCTTGTTTCCACCCTGGTCAACATATCTGGCA 9466 Query 48384 GTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAA 48443 || | ||| | || | | |||||| || | ||||| ||| | ||||| ||||| | | Sbjct 9467 GTCTGGTTGAATACACGCAGCATTGGTACTACTCCATTAGATGTTCCATTTGTTCCTGCA 9526 Query 48444 ATATAACTTCCACTAGCTCTTATATT-ACTAATTGAAATACCTATACCACCTGCCATTTT 48502 || ||| ||| | ||||| || || || ||| || || |||||||| ||| Sbjct 9527 ATGTAAGATCCTGTGGCTCTGATGTTGTGTACACTCAAT-CCAATTCCACCTGCTGATTT 9585 Query 48503 AGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCAT 48562 ||||| | |||||| | || || |||||||| || || ||||| |||||||| |||| Sbjct 9586 TGATATCATGGCACACTGCTTTAGTGTATCATAGATACCCTCTATGCTATCATCACTCAT 9645 Query 48563 ATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGG 48622 | | ||| || || | ||| || | ||||| || ||||||| |||||| Sbjct 9646 TGCCAGCAAAAAGCACGATGAGAGTTGTGGCCGGTTTGTTCCCGAGTTAAATAGTGTTGG 9705 Query 48623 AGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTAT 48682 |||||||| |||| || || | || ||||||||||| || | | || || Sbjct 9706 TGATGCATGTGTAAATAGCCGCTGCGACATCATGTTATATGTTTCTATTGCTGCCTCAAT 9765 Query 48683 ATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAAT 48742 || | ||||| || | | || | ||| || | ||| || ||||| || || | Sbjct 9766 GTCTTCTCCGTGTATTCCAAGACTGACTCTCATCAAAAGATACTGTGGTCTCTCTACCAC 9825 Query 48743 TTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 |||| |||| | |||| | ||||| || | |||||| ||||| ||||||||||| Sbjct 9826 TTTGCCGTTTACTCTCAACAAGTATGAGCGCTCGAGTGTTTTGAAACCGAAATAGTTGTA 9885 Score = 86.0 bits (94), Expect = 7e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 46982 AGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAA 47041 |||||| || |||| || | || | ||| || || ||||| |||||||| ||||| | Sbjct 7984 AGTAAATTTGATTGCATCAGCAGCAGGTTTGGTGCGCAAATAGTACATACCGGTCTTGAG 8043 Query 47042 ACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAAT 47101 ||| |||| || |||||||||||||| || | ||| || | || | || Sbjct 8044 ACCCTTTTTCCAGCCGTAGAAATGCATACTTGTCAGTTTTTGGTAGTTTGGATTGTCCAT 8103 Query 47102 ATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAA 47161 ||||| || |||||||| ||| |||||||| ||||| | ||| || |||| || || Sbjct 8104 GTGAATGTTCAGAGATTGTGACTGGTCAATAAAGGCACCACGATCGGCAGCCAAGTCCAA 8163 Query 47162 AA 47163 || Sbjct 8164 AA 8165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562095070492560