Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq492 84.2 2e-11 seq182 82.4 6e-11 >seq492 Length=46864 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || |||||| || || || || || || || |||| | || || Sbjct 26935 ACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGGGTTCGTCCATCTTCA 26994 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| || || || || || || ||||| || | |||| || ||||| || | Sbjct 26995 AGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTATCCTGA 27054 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| || | | | ||||| | ||| ||||| | ||||| || || Sbjct 27055 ATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTCTTG 27114 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||||||||| ||||||||||| Sbjct 27115 CCTGTCAAAGTTTTTACGAAAATCTGCAT 27143 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || |||||| || || || || || || || |||| | || || Sbjct 27163 ACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGGGTTCGTCCATCTTCA 27222 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| || || || || || || ||||| || | |||| || ||||| || | Sbjct 27223 AGTTGCTTTCCTGCGAAGATAAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTATCCTGA 27282 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| || | | | ||||| | ||| ||||| | ||||| || || Sbjct 27283 ATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTCTTG 27342 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| |||||||||||||||||||| Sbjct 27343 CCTGTCAAGGTTTTTACAAAAATCTGCAT 27371 >seq182 Length=36121 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || || || || || | | | || |||| || || || || || ||||| Sbjct 35282 CTCCTTCTGGATGTTATAGTCGGACAAAGTGCGTCCGTCTTCTAATTGTTTTCCTGCAAA 35223 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| ||| |||||||| | |||| ||||||||||| ||||| || ||| Sbjct 35222 AATCAATCGTTGTTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATT 35163 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||| ||||| | || || || || || |||||||| || || Sbjct 35162 TTCGATGGTATCGGAAGGCTCGACCTCAAGGGTGATGGTCTTACCGGTCAAAGTCTTAAC 35103 Query 48755 AAAAATCTGCATC 48767 ||||||||||||| Sbjct 35102 AAAAATCTGCATC 35090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380928528209142