Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq182 120 9e-22 seq1717 104 7e-17 seq882 104 7e-17 >seq182 Length=36121 Score = 120 bits (132), Expect = 9e-22 Identities = 222/320 (69%), Gaps = 8/320 (3%) Strand=Plus/Minus Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 || |||| ||||||||||| ||||| || || | || || || |||| | || || Sbjct 6834 TTTCCAATTGCATCAATTTCATCAATAAAGATAATGCATGGTGAGTTTTTCTTGGCGTTT 6775 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||| || || | || | ||| ||||||| ||| ||| |||| || |||||||| ||| Sbjct 6774 TGAAACAAATCACGCACTCTGGAAGCTCCAACACCTACAAACATCTCCACAAATTCGGAA 6715 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 || ||| || ||||| ||| || || || ||| |||| | |||| ||| ||| Sbjct 6714 CCGCTCACTGAAAAGAATGGCACACCCGCCTCCCCAGCTGTTGCCTTGGCCAAAAGCGTC 6655 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAA---CTCCCTTTGGTACTTTTGC-CCCAGC 289262 || ||||||||||||||| || ||| |||| | || ||||| ||| || ||||| Sbjct 6654 TTTCCTGTTCCAGGTGGT-CCGCTA--AGAATTGCACCTCGTGGTATTTTAGCTCCCAGG 6598 Query 289263 AGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 | | || || ||| | || || || | |||| ||| || ||| | ||| || Sbjct 6597 CG-TTCGTACCGATCTGGGTTTTTCAAGAAATTGACAAACTCCATAATTTCCTCTTTGGC 6539 Query 289323 CTCATCACATCCTGCTACAT 289342 |||||||||||||| |||| Sbjct 6538 TTCATCACATCCTGCAACAT 6519 >seq1717 Length=61146 Score = 104 bits (114), Expect = 7e-17 Identities = 215/315 (68%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 302554 TCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTT 302613 ||||| || ||||| ||||||| ||||| | | ||| || ||||| || ||| Sbjct 39587 TCATAGTGAACCATAACATCTTCCAACGCCTTGACCAGTCTACGTTGGATATAGCCTGTT 39646 Query 302614 GTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAAT 302673 | || || ||||| |||||||| | || ||||||| ||||| || ||||| | Sbjct 39647 TCGGCGGTCTTGACAGCAGTATCAATCAACCCTTCACGACCTCCCATTGCGTGGAAATAA 39706 Query 302674 AGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | ||||| || ||| | || | | | | || |||| || || ||||| | || Sbjct 39707 AACTCTTGTGG-CGTCAATCCACTCAGATACGAATTCTCCACAAACCCACGACTGTGTGG 39765 Query 302733 CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTC-ATAGCCGTATGGGATAC 302791 | || |||| ||||||||||||||||| || | | |||| |||| | || |||| Sbjct 39766 TGTATAGTCGTCCTTGGTAAAGTGTGGCAATGTAC-GGTCTCGGAAGCCAAAGGGAATAC 39824 Query 302792 GCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCAC 302851 |||| || ||||||||||||||||| | | |||||||||| | ||| | || Sbjct 39825 GCTTACCTTCAACGTTCTGCTGTCCAACCGCTGCTGTCATCTGCGACACATTGATATAGG 39884 Query 302852 TGCCCTTGGAGCCAG 302866 |||||||| |||| Sbjct 39885 ACCCCTTGGATCCAG 39899 >seq882 Length=4381 Score = 104 bits (114), Expect = 7e-17 Identities = 177/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| || || ||||| | ||| || |||| || ||| |||||||| | || | || Sbjct 496 GGCAATCAGGCCACAACGGTCACAGACGTGGATGCGGTAGGCATCAGAGACAGCAAACAG 437 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || | || ||| || || ||||| |||||||| |||||||||||||||||||| Sbjct 436 GCGTTCTTTTAGGAAATTGGAGGCGCCGTGAGAAATCATGCAATCACGCTCCATTTCACC 377 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 |||||| ||||||||||| || | | |||||| | ||||| || || || | || Sbjct 376 GAAACGCAGACCACCATCACGCGAACGGCCCTCGACGGGCTGGCGGGTCAGGATCTGCAG 317 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 || || | | | ||| || || | ||||| || ||||| ||||||||| | Sbjct 316 GGGCCCACGAGCTCTGGAATGGATTTTGTCGTCGACCATGTGTTTGAGGCGCTGGTAGTA 257 Query 251643 TGCGGGACCGATGAAGA 251659 | ||| || | ||||| Sbjct 256 GGTGGGGCCAAAGAAGA 240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471780752126498