Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq492 123 2e-23 seq845 107 1e-18 seq462 107 1e-18 seq182 95.1 8e-15 >seq492 Length=46864 Score = 123 bits (136), Expect = 2e-23 Identities = 165/227 (73%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| || ||| ||||| ||||||||||| || ||| | || |||| Sbjct 27160 AGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGGGTTCGTCCATCT 27219 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| |||||||| || ||||| |||||| | || | || ||||| || Sbjct 27220 TCAAGTTGCTTTCCTGCGAAGATAAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTATCC 27279 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||||| | | || | || || |||||| || | || || ||| Sbjct 27280 TGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTC 27339 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATAGTGGACTAGTC 34992 || || || | ||| |||||||| |||||||| || | || |||||| Sbjct 27340 TTGCCTGTCAAGGTTTTTACAAAAATCTGCAT-ATTG-GGTCTAGTC 27384 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| ||||||||||| || || | || |||| || ||||||||||| ||||| Sbjct 26724 CTCTTTCTGGATGTTATAGTCTGAAAGAGTTCGTCCATCTTCAAGTTGCTTTCCTGCGAA 26783 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || ||||| |||||| | || | ||| |||||||| | ||||| |||||| Sbjct 26784 GATGAGACGTTGTTGGTCTGGTGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTGACGTT 26843 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || || |||||| || | || || ||||| || || | || ||||| Sbjct 26844 TTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTCTTGCCTGTCAAAGTTTTTAC 26903 Query 34966 AAAGATCTGCAT 34977 || |||||||| Sbjct 26904 GAAAATCTGCAT 26915 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| || ||| ||||| ||||||||||| || ||| | || |||| Sbjct 26932 AGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGGGTTCGTCCATCT 26991 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| |||||||| || ||||| |||||| | || | || ||||| || Sbjct 26992 TCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTATCC 27051 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||||| | | || | || || |||||| || | || || ||| Sbjct 27052 TGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTC 27111 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | || ||||| || |||||||| Sbjct 27112 TTGCCTGTCAAAGTTTTTACGAAAATCTGCAT 27143 >seq845 Length=10035 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||||||||| || | | || |||| || ||||||||||| ||||| Sbjct 5400 CTCCTTTTGGATGTTATAGTCTGACAATGTACGACCATCCTCGAGTTGCTTTCCTGCGAA 5341 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| |||||| || ||| | || | || |||||||| | || ||| ||||| Sbjct 5340 AATCAATCGTTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATT 5281 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || || ||| || || | ||| || ||||| || || || |||||||| Sbjct 5280 TTCAATAGTATCTGAGGGCTCAACCTCGAGGGTAATTGTCTTACCGGTAAGTGTCTTTAC 5221 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 5220 GAAGATCTGCAT 5209 >seq462 Length=10693 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||||||||| || | | || |||| || ||||||||||| ||||| Sbjct 5428 CTCCTTTTGGATGTTATAGTCTGACAATGTACGACCATCCTCGAGTTGCTTTCCTGCGAA 5369 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| |||||| || ||| | || | || |||||||| | || ||| ||||| Sbjct 5368 AATCAATCGTTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATT 5309 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || || ||| || || | ||| || ||||| || || || |||||||| Sbjct 5308 TTCAATAGTATCTGAGGGCTCAACCTCGAGGGTAATTGTCTTACCGGTAAGTGTCTTTAC 5249 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 5248 GAAGATCTGCAT 5237 >seq182 Length=36121 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||||||||| || | |||| | || || | ||| ||||| || || Sbjct 35282 CTCCTTCTGGATGTTATAGTCGGACAAAGTGCGTCCGTCTTCTAATTGTTTTCCTGCAAA 35223 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| |||||| || ||| | || | ||||||||||| | || || || || Sbjct 35222 AATCAATCGTTGTTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATT 35163 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || | |||||| |||| ||| |||||||| || || | ||||| || Sbjct 35162 TTCGATGGTATCGGAAGGCTCGACCTCAAGGGTGATGGTCTTACCGGTCAAAGTCTTAAC 35103 Query 34966 AAAGATCTGCAT 34977 ||| |||||||| Sbjct 35102 AAAAATCTGCAT 35091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325685043829526