Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq492 192 1e-43 seq182 174 3e-38 seq845 147 4e-30 seq462 147 4e-30 >seq492 Length=46864 Score = 192 bits (212), Expect = 1e-43 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || ||||| |||||||| |||||||| || ||||| || | Sbjct 27143 TACCACCACGCAGACGAAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTG 27202 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||| || ||||| ||||| ||||| || ||||| || | |||||| ||||| | Sbjct 27203 AAAGGGTTCGTCCATCTTCAAGTTGCTTTCCTGCGAAGATAAGACGTTGTTGGTCTGGTG 27262 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||||||||| |||||||| ||||| || |||||||| ||||| || || | Sbjct 27263 GAATTCCTTCCTTATCCTGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGA 27322 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||||||||| || |||||||| |||||||| Sbjct 27323 CCTCGAGTGTAATTGTCTTGCCTGTCAAGGTTTTTACAAAAATCTGCAT 27371 Score = 188 bits (208), Expect = 1e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || ||||| |||||||| |||||||| || ||||| || | Sbjct 26915 TACCACCACGCAGACGAAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTG 26974 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||| || ||||| ||||| ||||| || ||||| || | |||||| ||||| | Sbjct 26975 AAAGGGTTCGTCCATCTTCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTG 27034 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||||||||| |||||||| ||||| || |||||||| ||||| || || | Sbjct 27035 GAATTCCTTCCTTATCCTGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGA 27094 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||||||||| || ||||| || |||||||| Sbjct 27095 CCTCGAGTGTAATTGTCTTGCCTGTCAAAGTTTTTACGAAAATCTGCAT 27143 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || ||| || |||||||| |||||||| |||||||| || ||||| || || Sbjct 26688 ACCACCACGCAGACGAAGTACTAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGA 26747 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| ||| || ||||| ||||| ||||| || ||||| || | |||||| ||||| || Sbjct 26748 AAGAGTTCGTCCATCTTCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGG 26807 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| || || || || || || || |||||||| ||||| || || || Sbjct 26808 AATCCCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCTGAGGGCTCGAC 26867 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||||||||| || ||||| || |||||||| Sbjct 26868 CTCGAGTGTAATTGTCTTGCCTGTCAAAGTTTTTACGAAAATCTGCAT 26915 >seq182 Length=36121 Score = 174 bits (192), Expect = 3e-38 Identities = 179/233 (77%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 82578 CACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAA 82637 |||| ||| || | || ||| ||||| ||||||| ||||| || ||||| || ||||| Sbjct 35322 CACC-ACCACCACGCAGACGGAGAACCAAGTGCAATGTAGACTCCTTCTGGATGTTATAG 35264 Query 82638 TCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCT 82697 || || | | | | |||||||||| ||||||||| ||||| || | || |||||||||| Sbjct 35263 TCGGACAAAGTGCGTCCGTCTTCTAATTGTTTTCCTGCAAAAATCAATCGTTGTTGATCT 35204 Query 82698 GGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT 82757 || || ||||| ||||| || || ||||| || || |||||||| || ||||| ||| Sbjct 35203 GGTGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATTTTCGATGGTATCGGAAGGC 35144 Query 82758 TCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || | || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 35143 TCGACCTCAAGGGTGATGGTCTTACCGGTCAAAGTCTTAACAAAAATCTGCAT 35091 >seq845 Length=10035 Score = 147 bits (162), Expect = 4e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||||| |||||| || || || || ||||| || || | | | ||| Sbjct 5423 CGGAGCACCAAGTGCAAAGTAGACTCCTTTTGGATGTTATAGTCTGACAATGTACGACCA 5364 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || ||||| ||||| || || || | || |||||||||||| || ||||||||||| Sbjct 5363 TCCTCGAGTTGCTTTCCTGCGAAAATCAATCGTTGTTGATCTGGTGGAATTCCTTCCTTG 5304 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || |||||||| || ||||||||||| ||||| || || || || | || || Sbjct 5303 TCCTGGATCTTTGCCTTGACATTTTCAATAGTATCTGAGGGCTCAACCTCGAGGGTAATT 5244 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || | |||||||| || ||||||||| Sbjct 5243 GTCTTACCGGTAAGTGTCTTTACGAAGATCTGCATT 5208 >seq462 Length=10693 Score = 147 bits (162), Expect = 4e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||||| |||||| || || || || ||||| || || | | | ||| Sbjct 5451 CGGAGCACCAAGTGCAAAGTAGACTCCTTTTGGATGTTATAGTCTGACAATGTACGACCA 5392 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || ||||| ||||| || || || | || |||||||||||| || ||||||||||| Sbjct 5391 TCCTCGAGTTGCTTTCCTGCGAAAATCAATCGTTGTTGATCTGGTGGAATTCCTTCCTTG 5332 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || |||||||| || ||||||||||| ||||| || || || || | || || Sbjct 5331 TCCTGGATCTTTGCCTTGACATTTTCAATAGTATCTGAGGGCTCAACCTCGAGGGTAATT 5272 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || | |||||||| || ||||||||| Sbjct 5271 GTCTTACCGGTAAGTGTCTTTACGAAGATCTGCATT 5236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981802619342406