Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1717 84.2 4e-11 seq59 84.2 4e-11 >seq1717 Length=61146 Score = 84.2 bits (92), Expect = 4e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 143033 ATGGGCGGATGTTTTTCTTATAGCGCCC-TTAACGGCAAATACGTTAGCAAAAATAGCCA 143091 |||||||||||| || || || || || ||| ||| ||| | ||||||||||| | Sbjct 55736 ATGGGCGGATGTAGCGCTAATTGCTCCTGTTGACGCCAA-TACCATGGCAAAAATAGCAA 55678 Query 143092 ACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTC 143151 |||| |||| || || | ||||| | | | | ||||| |||||| | || || ||| Sbjct 55677 ACGGATTATGTGACAACCTTCTAACGTGTTTGTTGAGAGCATGGGATTTGAAAAATCCTG 55618 Query 143152 TTATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAAACA 143209 | || | || || || ||||||| | |||||||| | ||||| || || | ||||| Sbjct 55617 TGGTTCTGTGCCCAGCCATGAATACCTTTATGTGGAACCATCCAATGACTGGCAAACA 55560 >seq59 Length=16916 Score = 84.2 bits (92), Expect = 4e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 143033 ATGGGCGGATGTTTTTCTTATAGCGCCC-TTAACGGCAAATACGTTAGCAAAAATAGCCA 143091 |||||||||||| || || || || || ||| ||| ||| | ||||||||||| | Sbjct 10667 ATGGGCGGATGTAGCGCTAATTGCTCCTGTTGACGCCAA-TACCATGGCAAAAATAGCAA 10609 Query 143092 ACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTC 143151 |||| |||| || || | ||||| | | | | ||||| |||||| | || || ||| Sbjct 10608 ACGGATTATGTGACAACCTTCTAACGTGTTTGTTGAGAGCATGGGATTTGAAAAATCCTG 10549 Query 143152 TTATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAAACA 143209 | || | || || || ||||||| | |||||||| | ||||| || || | ||||| Sbjct 10548 TGGTTCTGTGCCCAGCCATGAATACCTTTATGTGGAACCATCCAATGACTGGCAAACA 10491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903389134181440