Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq845 100 3e-16 seq492 100 3e-16 seq462 100 3e-16 seq1894 82.4 7e-11 seq732 82.4 7e-11 >seq845 Length=10035 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||| ||||| || ||| |||| | || || || || || || || ||||||||| Sbjct 5363 TCCTCGAGTTGCTTTCCTGCGAAAATCAATCGTTGTTGATCTGGTGGAATTCCTTCCTTG 5304 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||||| ||||| | |||| || || | |||||| || |||| ||| | Sbjct 5303 TCCTGGATCTTTGCCTTGACATTTTCAATAGTATCTGAGGGCTCAACCTCGAGGGTAATT 5244 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || || |||||||| |||||||| Sbjct 5243 GTCTTACCGGTAAGTGTCTTTACGAAGATCTGCAT 5209 >seq492 Length=46864 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || ||||| || ||| | ||||| || || ||||| || || || ||||||||| Sbjct 26761 TCTTCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATCCCTTCCTTG 26820 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||||| | |||| || || | |||||| || |||| || | Sbjct 26821 TCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATT 26880 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| |||| ||||||||||||||||||||| Sbjct 26881 GTCTTGCCTGTCAAAGTTTTTACGAAAATCTGCAT 26915 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || ||||| || ||| | ||||| || || ||||| || || || |||||||| Sbjct 26989 TCTTCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTA 27048 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| |||| | |||| || || | |||||| || |||| || | Sbjct 27049 TCCTGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATT 27108 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| |||| ||||||||||||||||||||| Sbjct 27109 GTCTTGCCTGTCAAAGTTTTTACGAAAATCTGCAT 27143 >seq462 Length=10693 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||| ||||| || ||| |||| | || || || || || || || ||||||||| Sbjct 5391 TCCTCGAGTTGCTTTCCTGCGAAAATCAATCGTTGTTGATCTGGTGGAATTCCTTCCTTG 5332 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||||| ||||| | |||| || || | |||||| || |||| ||| | Sbjct 5331 TCCTGGATCTTTGCCTTGACATTTTCAATAGTATCTGAGGGCTCAACCTCGAGGGTAATT 5272 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || || |||||||| |||||||| Sbjct 5271 GTCTTACCGGTAAGTGTCTTTACGAAGATCTGCAT 5237 >seq1894 Length=33155 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880 || || || || | ||| ||||| ||| || || || || |||| || || ||||| Sbjct 22243 GCTATTGATGCCAAATTACACACAGCCACTTCGTCAGGTGCAGTGTATTCCACTATCTCC 22302 Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940 | |||| ||||||| || || ||||| ||||| || || ||||||||||||| Sbjct 22303 GTACACAAGTTGCTGCTCTTTATTGTGCCCAGGTTCTGCTGGTTTGACTTGCTGTTGCAC 22362 Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 || || ||||||| |||||| || ||| ||||| Sbjct 22363 GCATCTTTGTACAACATGTATGGCGTGCCTGTTTC 22397 >seq732 Length=14862 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880 || || || || | ||| ||||| ||| || || || || |||| || || ||||| Sbjct 8960 GCTATTGATGCCAAATTACACACAGCCACTTCGTCAGGTGCAGTGTATTCCACTATCTCC 9019 Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940 | |||| ||||||| || || ||||| ||||| || || ||||||||||||| Sbjct 9020 GTACACAAGTTGCTGCTCTTTATTGTGCCCAGGTTCTGCTGGTTTGACTTGCTGTTGCAC 9079 Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 || || ||||||| |||||| || ||| ||||| Sbjct 9080 GCATCTTTGTACAACATGTATGGCGTGCCTGTTTC 9114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483408992446960