Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1894 176 1e-38 seq732 176 1e-38 seq1874 89.7 1e-12 >seq1894 Length=33155 Score = 176 bits (194), Expect = 1e-38 Identities = 426/636 (67%), Gaps = 12/636 (2%) Strand=Plus/Minus Query 110469 CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTT 110528 ||||| | || || ||||||||| | ||||| || | |||| | | || |||||| Sbjct 22997 CATGCATCACCAACACTATTTAACTCGGGAACAAACCGGCCACAACTCTCATCGTGCTTT 22938 Query 110529 CTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCT 110588 | || | ||| | |||||| || || ||||| |||||| | || || | ||| Sbjct 22937 TTGCTGGCAATGAGTGATGATAGCATAGAGGGTATCTATGATACACTAAAGCAGTGTGCC 22878 Query 110589 CTTATTTCTAAAAACTCTGGAGGAATTGGTATTCAC-GTTCATGATATTCGCTCAAAAGG 110647 | || || ||| | || |||||||| ||| | || || | || | | | ||| Sbjct 22877 ATGATATCAAAATCAGCAGGTGGAATTGG-ATTGAGTGTACACAACATCAGAGCCACAGG 22819 Query 110648 AGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTT 110707 | | | || ||| | | || || | || | |||| | || |||||| | | || || Sbjct 22818 ATCTTACATTGCAGGAACAAATGGAACATCTAATGGAGTAGTACCAATGCTGCGTGTATT 22759 Query 110708 CAACGACACTGCAAAATATGTGAATCAAGGTGGTAA---GAGAAATGGCTCATTTGCTAT 110764 |||| | ||||| | |||||| | || ||||| || |||| || |||||||||| Sbjct 22758 CAACCAGACTGCCAGATATGTTGACCAGGGTGGAAACAAGAGACCAGGTGCATTTGCTAT 22699 Query 110765 CTATCTCGAACCTTGGCATTCAGATATATTTGAATTC-TTAGAACTTCGTAAAAATCAAG 110823 ||| | || || ||||| ||||| | ||||| ||| |||| || || ||||| | Sbjct 22698 ATATTTGGAGCCATGGCACGCAGATGTGTTTGATTTCCTTAGT-CTGAAGAAGAATCACG 22640 Query 110824 GATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCA 110883 | ||||| | | ||||||||||| || |||| |||||||||| | ||| | |||| Sbjct 22639 GTAAGGAAGAGAACCGCGCACGTGATTTGTTCTATGGAATGTGGATTCCCGATCTGTTCA 22580 Query 110884 TGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTC 110943 |||| || ||| ||||| || |||||||| | || || ||| | || || Sbjct 22579 TGAAGCGAGTTTTGGAAAACGGAGAATGGTCTCTATTTTGCCCACATGAGGCGCCAAATC 22520 Query 110944 TATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCA 111003 | || || || | ||| | |||||||| | || ||| |||||||| |||| | || Sbjct 22519 TCTCAGAGGTGTGGGGAGATGAGTTTGAGAAGCTGTACACAAAATATG-AAAATACACCA 22461 Query 111004 AGTTTCGC---AAACA-AATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAA 111059 | |||| ||| | | | ||||||||| |||| |||| ||| | || |||||| Sbjct 22460 GGACTCGCCAGAAAGAGAGTACCAGCTCAACAACTGTGGTATGCAATTTTAGATTCACAA 22401 Query 111060 GTTGAAACTGGAACTCCTTATATTTTGTATAAAGAT 111095 | ||||| || || || || || ||||| |||||| Sbjct 22400 ATAGAAACAGGCACGCCATACATGTTGTACAAAGAT 22365 >seq732 Length=14862 Score = 176 bits (194), Expect = 1e-38 Identities = 426/636 (67%), Gaps = 12/636 (2%) Strand=Plus/Minus Query 110469 CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTT 110528 ||||| | || || ||||||||| | ||||| || | |||| | | || |||||| Sbjct 9714 CATGCATCACCAACACTATTTAACTCGGGAACAAACCGGCCACAACTCTCATCGTGCTTT 9655 Query 110529 CTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCT 110588 | || | ||| | |||||| || || ||||| |||||| | || || | ||| Sbjct 9654 TTGCTGGCAATGAGTGATGATAGCATAGAGGGTATCTATGATACACTAAAGCAGTGTGCC 9595 Query 110589 CTTATTTCTAAAAACTCTGGAGGAATTGGTATTCAC-GTTCATGATATTCGCTCAAAAGG 110647 | || || ||| | || |||||||| ||| | || || | || | | | ||| Sbjct 9594 ATGATATCAAAATCAGCAGGTGGAATTGG-ATTGAGTGTACACAACATCAGAGCCACAGG 9536 Query 110648 AGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTT 110707 | | | || ||| | | || || | || | |||| | || |||||| | | || || Sbjct 9535 ATCTTACATTGCAGGAACAAATGGAACATCTAATGGAGTAGTACCAATGCTGCGTGTATT 9476 Query 110708 CAACGACACTGCAAAATATGTGAATCAAGGTGGTAA---GAGAAATGGCTCATTTGCTAT 110764 |||| | ||||| | |||||| | || ||||| || |||| || |||||||||| Sbjct 9475 CAACCAGACTGCCAGATATGTTGACCAGGGTGGAAACAAGAGACCAGGTGCATTTGCTAT 9416 Query 110765 CTATCTCGAACCTTGGCATTCAGATATATTTGAATTC-TTAGAACTTCGTAAAAATCAAG 110823 ||| | || || ||||| ||||| | ||||| ||| |||| || || ||||| | Sbjct 9415 ATATTTGGAGCCATGGCACGCAGATGTGTTTGATTTCCTTAGT-CTGAAGAAGAATCACG 9357 Query 110824 GATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCA 110883 | ||||| | | ||||||||||| || |||| |||||||||| | ||| | |||| Sbjct 9356 GTAAGGAAGAGAACCGCGCACGTGATTTGTTCTATGGAATGTGGATTCCCGATCTGTTCA 9297 Query 110884 TGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTC 110943 |||| || ||| ||||| || |||||||| | || || ||| | || || Sbjct 9296 TGAAGCGAGTTTTGGAAAACGGAGAATGGTCTCTATTTTGCCCACATGAGGCGCCAAATC 9237 Query 110944 TATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCA 111003 | || || || | ||| | |||||||| | || ||| |||||||| |||| | || Sbjct 9236 TCTCAGAGGTGTGGGGAGATGAGTTTGAGAAGCTGTACACAAAATATG-AAAATACACCA 9178 Query 111004 AGTTTCGC---AAACA-AATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAA 111059 | |||| ||| | | | ||||||||| |||| |||| ||| | || |||||| Sbjct 9177 GGACTCGCCAGAAAGAGAGTACCAGCTCAACAACTGTGGTATGCAATTTTAGATTCACAA 9118 Query 111060 GTTGAAACTGGAACTCCTTATATTTTGTATAAAGAT 111095 | ||||| || || || || || ||||| |||||| Sbjct 9117 ATAGAAACAGGCACGCCATACATGTTGTACAAAGAT 9082 >seq1874 Length=27503 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 278201 GAAATGATATTTGGGAATTTATTGACATCTACTAATTACAAGGAAGATGAAGAGCGACTC 278260 ||||||||||||||| | || |||||||| | || ||||| || |||||| || | | Sbjct 11772 GAAATGATATTTGGGCACTTGCTGACATCTTCAAACTACAACGACGATGAAAAGAAAGTG 11713 Query 278261 ACAGGAGGCAAAAATGGATATGGGGCAAAGCTGACAAATATCTTCTCAA 278309 |||||||| | |||||| ||||| ||||| || ||||| ||||||| Sbjct 11712 ACAGGAGGAAGAAATGGGTATGGAGCAAAATTGTGTAATATATTCTCAA 11664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186783087399794