Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq492 100 7e-16 >seq492 Length=46864 Score = 100 bits (110), Expect = 7e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | ||||| || || || || | || || || || || Sbjct 27368 CAGATTTTTGTAAAAACCTTGACAGGCAAGACAATTACACTCGAGGTCGAGCCCTCAGAT 27309 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| || |||||| || || ||||||||| || ||| || Sbjct 27308 ACCATTGAAAACGTCAAAGCCAA-GATTCAGGATAAGGAAGGAATTCCACCAGACCAACA 27250 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||||||||| |||||||| | ||||||||| | || | | || || ||| | Sbjct 27249 ACGTCTTATCTTCGCAGGAAAGCAACTTGAAGATGGACGAACCCTTTCAGACTATAACAT 27190 Query 206352 CCAGAAAGAGTCTACTCTTCAC 206373 |||||||||||||||||||||| Sbjct 27189 CCAGAAAGAGTCTACTCTTCAC 27168 Score = 98.7 bits (108), Expect = 2e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 ||||||||||||||||||||||| |||||||| | | ||| | ||||||||| || || Sbjct 26712 GTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGAGTTCGTCCATCTTCAAGTTG 26771 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||| |||||||| || |||||||| Sbjct 26772 CTTTCCTGCGAAGATGAGACGTTGTTG 26798 Score = 98.7 bits (108), Expect = 2e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 ||||||||||||||||||||||| |||||||| | | || | ||||||||| || || Sbjct 27168 GTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGGGTTCGTCCATCTTCAAGTTG 27227 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||| ||||||||||| |||||||| Sbjct 27228 CTTTCCTGCGAAGATAAGACGTTGTTG 27254 Score = 95.1 bits (104), Expect = 3e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || ||||||||| || ||| ||| | || |||||||| |||||| Sbjct 27059 AAGATTCAGGATAAGGAAGGAATTCCACCAGACCAACAACGTCTCATCTTCGCAGGAAAG 27000 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | ||||||||| | || | | || || ||| ||||||||||||||||||||||| Sbjct 26999 CAACTTGAAGATGGACGAACCCTTTCAGACTATAACATCCAGAAAGAGTCTACTCTTCAC 26940 Score = 95.1 bits (104), Expect = 3e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 ||||||||||||||||||||||| |||||||| | | || | ||||||||| || || Sbjct 26940 GTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGGGTTCGTCCATCTTCAAGTTG 26999 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||| |||||||| || |||||||| Sbjct 27000 CTTTCCTGCGAAGATGAGACGTTGTTG 27026 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || || || || || ||||| ||| || ||| ||| | || |||||||| |||||| Sbjct 26831 AAAATCCAGGACAAGGAAGGGATTCCACCAGACCAACAACGTCTCATCTTCGCAGGAAAG 26772 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | ||||||||| | ||| | | || || ||| ||||||||||||||||||||||| Sbjct 26771 CAACTTGAAGATGGACGAACTCTTTCAGACTATAACATCCAGAAAGAGTCTACTCTTCAC 26712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181791212377634