Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1894 152 6e-32 seq732 152 6e-32 seq1005 125 9e-24 >seq1894 Length=33155 Score = 152 bits (168), Expect = 6e-32 Identities = 554/862 (64%), Gaps = 10/862 (1%) Strand=Plus/Plus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 ||||| || |||||||||||||| || |||||| || || | ||||| || | Sbjct 22237 GGAAGTGCTATTGATGCCAAATTACACACAGCCACTTCGTCAGGTGCAGTGTATTCCACT 22296 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || ||||| |||||| ||||| || || |||| |||| ||||| ||| || Sbjct 22297 ATCTCCGTACACAAGTTGCTGCTCTTTATTGTGCCCAGGTTCTGCTGGTTTGACTTGCTG 22356 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||||||||| ||||| | |||||| ||||| || || || | ||||| | | ||| Sbjct 22357 TTGCACGCATCTTTGTACAACATGTATGGCGTGCCTGTTTCTATTTGTGAATCTAAAATT 22416 Query 111410 GCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCG---CCTCGTAC 111466 || | ||| | | |||||||| | |||| |||| | || || Sbjct 22417 GCATACCACAGTTGTTGAGCTGGTACTCTCTTTCTGGCGAGTCCTGGTGTATTTTCATAT 22476 Query 111467 TTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT 111526 |||||||| || |||||||| || ||| | | || |||||| ||| |||| | | Sbjct 22477 TTTGTGTACAGCTTCTCAAACTCATCTCCCCACACCTCTGAGAGATTTGGCGCCTCATGT 22536 Query 111527 GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586 || || || |||||||||| || |||| ||| ||||||||||| || || |||||| Sbjct 22537 GGGCAAAATAGAGACCATTCTCCGTTTTCCAAAACTCGCTTCATGAACAGATCGGGAATC 22596 Query 111587 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 111646 |||| | || | ||| | || |||||| | ||| || || || | | Sbjct 22597 CACATTCCATAGAACAAATCACGTGCGCGGTTCTCTTCCTTACCGTGATT-CTTCTTCAG 22655 Query 111647 TC-AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC--- 111702 | |||||| || | | ||| |||||||||||||| | ||| | || | | || Sbjct 22656 ACTAAGGAAATCAAACACATCTGCGTGCCATGGCTCCAAATATATAGCAAATGCACCTGG 22715 Query 111703 -CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 111761 || | | ||| | || | ||||| | || || ||| ||||| || ||||||| Sbjct 22716 TCTCTTG-TTTCCACCCTGGTCAACATATCTGGCAGTCTGGTTGAATACACGCAGCATTG 22774 Query 111762 GAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACAT 111821 | | | |||| ||| |||||||| || ||| |||| ||||||| | | Sbjct 22775 GTACTACTCCATTAGATGTTCCATTTGTTCCTGCAATGTAAGATCCTGTGGCTCTGATGT 22834 Query 111822 CATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAG 111881 || | || ||||| || || || | ||||| || ||||||| | | || | Sbjct 22835 TGTGTACACTCAATCCAATTCCACCTGCTGATTTTGATATCATGGCACACTGCTTTAGTG 22894 Query 111882 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 111941 | |||||||||| | || || || | | || | | ||||| || | | Sbjct 22895 TATCATAGATACCCTCTATGCTATCATCACTCATTGCCAGCAAAAAGCACGATGAGAGTT 22954 Query 111942 GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGG 112001 | || | ||| || | || || || ||||||| ||| || | || | | || | Sbjct 22955 GTGGCCGGTTTGTTCCCGAGTTAAATAGTGTTGGTGATGCATGTGTAAATAGCCGCTGCG 23014 Query 112002 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGA 112061 ||||| ||| ||||| || | | | ||||||||||| ||||| || || | || Sbjct 23015 ACATCATGTTATATGTTTCTATTGCTGCCTCAATGTCTTCTCCGTGTATTCCAAGACTGA 23074 Query 112062 CCCGCATGAACATGTACTGTGG 112083 | | ||| || | |||||||| Sbjct 23075 CTCTCATCAAAAGATACTGTGG 23096 >seq732 Length=14862 Score = 152 bits (168), Expect = 6e-32 Identities = 554/862 (64%), Gaps = 10/862 (1%) Strand=Plus/Plus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 ||||| || |||||||||||||| || |||||| || || | ||||| || | Sbjct 8954 GGAAGTGCTATTGATGCCAAATTACACACAGCCACTTCGTCAGGTGCAGTGTATTCCACT 9013 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || ||||| |||||| ||||| || || |||| |||| ||||| ||| || Sbjct 9014 ATCTCCGTACACAAGTTGCTGCTCTTTATTGTGCCCAGGTTCTGCTGGTTTGACTTGCTG 9073 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||||||||| ||||| | |||||| ||||| || || || | ||||| | | ||| Sbjct 9074 TTGCACGCATCTTTGTACAACATGTATGGCGTGCCTGTTTCTATTTGTGAATCTAAAATT 9133 Query 111410 GCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCG---CCTCGTAC 111466 || | ||| | | |||||||| | |||| |||| | || || Sbjct 9134 GCATACCACAGTTGTTGAGCTGGTACTCTCTTTCTGGCGAGTCCTGGTGTATTTTCATAT 9193 Query 111467 TTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT 111526 |||||||| || |||||||| || ||| | | || |||||| ||| |||| | | Sbjct 9194 TTTGTGTACAGCTTCTCAAACTCATCTCCCCACACCTCTGAGAGATTTGGCGCCTCATGT 9253 Query 111527 GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586 || || || |||||||||| || |||| ||| ||||||||||| || || |||||| Sbjct 9254 GGGCAAAATAGAGACCATTCTCCGTTTTCCAAAACTCGCTTCATGAACAGATCGGGAATC 9313 Query 111587 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 111646 |||| | || | ||| | || |||||| | ||| || || || | | Sbjct 9314 CACATTCCATAGAACAAATCACGTGCGCGGTTCTCTTCCTTACCGTGATT-CTTCTTCAG 9372 Query 111647 TC-AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC--- 111702 | |||||| || | | ||| |||||||||||||| | ||| | || | | || Sbjct 9373 ACTAAGGAAATCAAACACATCTGCGTGCCATGGCTCCAAATATATAGCAAATGCACCTGG 9432 Query 111703 -CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 111761 || | | ||| | || | ||||| | || || ||| ||||| || ||||||| Sbjct 9433 TCTCTTG-TTTCCACCCTGGTCAACATATCTGGCAGTCTGGTTGAATACACGCAGCATTG 9491 Query 111762 GAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACAT 111821 | | | |||| ||| |||||||| || ||| |||| ||||||| | | Sbjct 9492 GTACTACTCCATTAGATGTTCCATTTGTTCCTGCAATGTAAGATCCTGTGGCTCTGATGT 9551 Query 111822 CATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAG 111881 || | || ||||| || || || | ||||| || ||||||| | | || | Sbjct 9552 TGTGTACACTCAATCCAATTCCACCTGCTGATTTTGATATCATGGCACACTGCTTTAGTG 9611 Query 111882 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 111941 | |||||||||| | || || || | | || | | ||||| || | | Sbjct 9612 TATCATAGATACCCTCTATGCTATCATCACTCATTGCCAGCAAAAAGCACGATGAGAGTT 9671 Query 111942 GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGG 112001 | || | ||| || | || || || ||||||| ||| || | || | | || | Sbjct 9672 GTGGCCGGTTTGTTCCCGAGTTAAATAGTGTTGGTGATGCATGTGTAAATAGCCGCTGCG 9731 Query 112002 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGA 112061 ||||| ||| ||||| || | | | ||||||||||| ||||| || || | || Sbjct 9732 ACATCATGTTATATGTTTCTATTGCTGCCTCAATGTCTTCTCCGTGTATTCCAAGACTGA 9791 Query 112062 CCCGCATGAACATGTACTGTGG 112083 | | ||| || | |||||||| Sbjct 9792 CTCTCATCAAAAGATACTGTGG 9813 >seq1005 Length=21531 Score = 125 bits (138), Expect = 9e-24 Identities = 343/515 (67%), Gaps = 19/515 (4%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| || | | |||||||| |||||||| || ||||||||||| || Sbjct 9338 GTGAAGGCCCTCGTCCCTACAGATAAGTTCGTTTGAGAATGTAAGGCCTGGCATGAGCCC 9397 Query 122730 CCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCA-CA 122787 | ||||||||||| | || || ||| || || || || || |||| |||||| | | Sbjct 9398 TCTTTTCTTCAACCAGAAGATGGCAGCA-AAGGAGCCTGAAAAAAAGACACCCTCGATTA 9456 Query 122788 CACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATT 122847 || || || ||| ||| || || | ||| | ||| | || | |||||| | | Sbjct 9457 CA-GCGAATGCAGCAAGACGCTCTCCAAAGCTGGCCTCCTTATCTTCTATCCATTTTAAT 9515 Query 122848 GCCCATTTCGCCTT-CTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTT 122906 ||||||| || || | ||| ||||| || | ||| | || | || | | | Sbjct 9516 GCCCATTGGGCTTTGCGTCT-GATACAGGGAATGTTTTCAACTGCGTTGAAAAGGTAGCT 9574 Query 122907 CTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAAC 122966 |||||| | | |||||||||||||| |||| ||||| ||| || |||| | || | Sbjct 9575 CTTTTCTGCTTCATCCTTAATGTATGTGTCTATCAAGAGTGAGTACATTTCACTGTGGA- 9633 Query 122967 CATT-----TCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACC 123021 ||| |||| || ||| || ||||||| || ||||| |||||||||| Sbjct 9634 TATTCTCCATCATAAT----TTGGAATCCGTAGAAGCTACGTGCTTCTGGTATCTGAACC 9689 Query 123022 TCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAAT 123081 || | |||| || | | ||| ||| || ||||| || || | ||||| || Sbjct 9690 TCTTTACCAAAGTTAAAAACAAGATTTTCATTCACTATTCCGTCTGAGGCTGCAAAAAAG 9749 Query 123082 GCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAG---GGTCTTCCAGTCGTCA 123138 ||||| |||| || || || | ||||||| ||||| || | | | ||||| ||| Sbjct 9750 GCCAGAATGTGTTTGATAAAATATCTTTCATTGTCATTGAGTTTGTTTTCCCAGTGCTCA 9809 Query 123139 AGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 | ||| | | | |||||| ||||| |||||||| Sbjct 9810 ATATCATGCGCTAGATCAACCTCTTCGGCAGTCCA 9844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628016660318400