Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1005 100 3e-16 seq1894 98.7 1e-15 seq732 98.7 1e-15 >seq1005 Length=21531 Score = 100 bits (110), Expect = 3e-16 Identities = 374/573 (65%), Gaps = 14/573 (2%) Strand=Plus/Plus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||| || || || | || | ||| || || || | |||||| ||||| || || | || Sbjct 9344 GCCCTCGTCCCTACAGATAAGTTCGTTTGAGAATGTAAGGCCTGGCATGAGCCCTCTTTT 9403 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGAC-ACACGCAA 74886 ||||||||| ||||||||| ||||| || || |||| || |||| ||| || | Sbjct 9404 CTTCAACCAGAAGATGGCAGCAAAGGAGCCTGAAAAAAAGACACCCTCGATTACA-GCGA 9462 Query 74887 AGGCGACAAGGCGTTGCGCGAACGGTG-CATCGGAAG--TC-ATCCAAGTCTGAGCCCAT 74942 | || |||| || | | | || | || | || | || ||||| | |||||| Sbjct 9463 ATGCAGCAAGACGCT-CTCCAAAGCTGGCCTCCTTATCTTCTATCCATTTTAATGCCCAT 9521 Query 74943 TCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATC-GCTTGGAAGAGGCTTGC-CTTCT 75000 | ||||| ||| ||| |||||| || | | | || | ||| ||| | || ||| | Sbjct 9522 TGGGCTTTGCGTCTGATA-CAGGGAATGTTTTCAACTGCGTTGAAAAGG-TAGCTCTTTT 9579 Query 75001 CTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACT 75060 || | |||||| | | |||| |||| ||||||||| | || || || || Sbjct 9580 CTGCTTCATCCTTAATGTATGTGTCTATCAAGAGTGAGTACATTTCACTGTGGATATTCT 9639 Query 75061 CGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAA 75120 | | | ||| | ||||||| || || |||| ||||| || || || || Sbjct 9640 CCATCATAATTTGGAATCCGTAGAAGCTACGTGCTTCTGGTATCTGAACCTCTTTACCAA 9699 Query 75121 AATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCA 75180 | || | | | ||| || | || || ||||| ||||| || ||||| ||||| | Sbjct 9700 AGTTAAAAACAAGATTTTCATTCACTATTCCGTCTGAGGCTGCAAAAAAGGCCAGAATGT 9759 Query 75181 TTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGT---CCCAATCCTTCAGGTCCCCCG 75237 ||||||||| | | |||| |||| ||||||||| |||| | || | || || Sbjct 9760 GTTTGATAAAATATCTTTCATTGTCATTGAGTTTGTTTTCCCAGTGCTCAATATCATGCG 9819 Query 75238 CCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACA 75297 | | ||||| ||| ||| | |||||||| | ||||||||||||| ||| | Sbjct 9820 CTAGATCAACCTCTTCGGCAGTCCAGAACGATGCTTCGGCCTTTTTGTACATGTTCCAAA 9879 Query 75298 AGTCAGGGTAATTGATTGGAAATGTCGTAAATC 75330 |||| ||| ||||||||||| || ||||| Sbjct 9880 TCTCAGTGTATTTGATTGGAAACATCACAAATC 9912 >seq1894 Length=33155 Score = 98.7 bits (108), Expect = 1e-15 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 55778 GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATG 55837 ||| || ||| ||||||||||| | || |||||||| || ||||||||||| |||| Sbjct 21443 GACTTGGCTGCCGATCGTGGTGCCTTTATTGACCAGTCACAATCTCTGAACATTCACATG 21384 Query 55838 GAGAATCCTTCACTGGCCAAGT-TGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACT 55896 || ||||| ||| | || ||| ||||| || ||||| ||||| ||||| || Sbjct 21383 GACAATCCAA-ACTACCAAAAACTGACAAGTATGCATTTCTACGGCTGGAAAAAGGGTCT 21325 Query 55897 CAAGACGGGTATGTACTATCTGCGGACC 55924 |||||| |||||||||||| |||| ||| Sbjct 21324 CAAGACCGGTATGTACTATTTGCGCACC 21297 >seq732 Length=14862 Score = 98.7 bits (108), Expect = 1e-15 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 55778 GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATG 55837 ||| || ||| ||||||||||| | || |||||||| || ||||||||||| |||| Sbjct 8160 GACTTGGCTGCCGATCGTGGTGCCTTTATTGACCAGTCACAATCTCTGAACATTCACATG 8101 Query 55838 GAGAATCCTTCACTGGCCAAGT-TGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACT 55896 || ||||| ||| | || ||| ||||| || ||||| ||||| ||||| || Sbjct 8100 GACAATCCAA-ACTACCAAAAACTGACAAGTATGCATTTCTACGGCTGGAAAAAGGGTCT 8042 Query 55897 CAAGACGGGTATGTACTATCTGCGGACC 55924 |||||| |||||||||||| |||| ||| Sbjct 8041 CAAGACCGGTATGTACTATTTGCGCACC 8014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547202634249200