Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq845 185 1e-41 seq462 185 1e-41 seq492 161 1e-34 seq182 138 1e-27 seq1894 104 3e-17 seq732 104 3e-17 >seq845 Length=10035 Score = 185 bits (204), Expect = 1e-41 Identities = 183/236 (78%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 27399 TACTATA--ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTT 27456 ||||||| ||||| ||||| || ||||| |||||||| ||||| ||||| || |||||| Sbjct 5200 TACTATAGAATGCAGATCTTCGTAAAGACACTTACCGGTAAGACAATTACCCTCGAGGTT 5259 Query 27457 GAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCT 27516 ||| | |||| |||| |||| | ||||| || || ||||||||||| |||||||| Sbjct 5260 GAGCCCTCAGATACTATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATTCCA 5319 Query 27517 CCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCA 27576 ||||| || || || | ||||| || || |||||||||||||||| |||||| | || Sbjct 5320 CCAGATCAACAACGATTGATTTTCGCAGGAAAGCAACTCGAGGATGGTCGTACATTGTCA 5379 Query 27577 GACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| |||||||||| || ||| | || | || | || ||||| ||||| Sbjct 5380 GACTATAACATCCAAAAGGAGTCTACTTTGCACTTGGTGCTCCGCCTTCGTGGTGG 5435 >seq462 Length=10693 Score = 185 bits (204), Expect = 1e-41 Identities = 183/236 (78%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 27399 TACTATA--ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTT 27456 ||||||| ||||| ||||| || ||||| |||||||| ||||| ||||| || |||||| Sbjct 5228 TACTATAGAATGCAGATCTTCGTAAAGACACTTACCGGTAAGACAATTACCCTCGAGGTT 5287 Query 27457 GAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCT 27516 ||| | |||| |||| |||| | ||||| || || ||||||||||| |||||||| Sbjct 5288 GAGCCCTCAGATACTATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATTCCA 5347 Query 27517 CCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCA 27576 ||||| || || || | ||||| || || |||||||||||||||| |||||| | || Sbjct 5348 CCAGATCAACAACGATTGATTTTCGCAGGAAAGCAACTCGAGGATGGTCGTACATTGTCA 5407 Query 27577 GACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| |||||||||| || ||| | || | || | || ||||| ||||| Sbjct 5408 GACTATAACATCCAAAAGGAGTCTACTTTGCACTTGGTGCTCCGCCTTCGTGGTGG 5463 >seq492 Length=46864 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || | || |||||||| ||||| || ||||| ||| | Sbjct 26915 ATGCAGATTTTCGTAAAAACTTTGACAGGCAAGACAATTACACTCGAGGTCGAGCCCTCA 26856 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||||||||||| ||||||||||| || ||||| |||||||| Sbjct 26855 GATACCATTGAAAACGTCAAGGCTAAAATCCAGGACAAGGAAGGGATTCCACCAGACCAA 26796 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || || || |||||||| || |||| || || || |||||||||| Sbjct 26795 CAACGTCTCATCTTCGCAGGAAAGCAACTTGAAGATGGACGAACTCTTTCAGACTATAAC 26736 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || |||||||| |||| | ||||| || ||||| Sbjct 26735 ATCCAGAAAGAGTCTACTCTTCACTTAGTACTTCGTCTGCGTGGTGG 26689 >seq182 Length=36121 Score = 138 bits (152), Expect = 1e-27 Identities = 172/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 27400 ACTATA--ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTG 27457 |||||| ||||| || ||||| ||||| | ||||| ||||| || || |||||||| | Sbjct 35083 ACTATAGGATGCAGATTTTTGTTAAGACTTTGACCGGTAAGACCATCACCCTTGAGGTCG 35142 Query 27458 AGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTC 27517 || | |||| ||| | |||| | |||||||| || |||||||||||||||||||| | Sbjct 35143 AGCCTTCCGATACCATCGAAAATGTTAAGGCTAAGATCCAGGACAAGGAGGGAATTCCAC 35202 Query 27518 CAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAG 27577 |||| || || || | |||||||| || || ||| | || || | || || | | | Sbjct 35203 CAGATCAACAACGATTGATTTTTGCAGGAAAACAATTAGAAGACGGACGCACTTTGTCCG 35262 Query 27578 ACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| |||| ||||| || || | || | || | ||||| || ||||| Sbjct 35263 ACTATAACATCCAGAAGGAGTCTACATTGCACTTGGTTCTCCGTCTGCGTGGTGG 35317 >seq1894 Length=33155 Score = 104 bits (114), Expect = 3e-17 Identities = 133/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 80886 CACAAATGCCGGAAG-GCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTG 80944 |||||||| |||||| ||| | || |||| ||| ||||| ||||| || |||| | | Sbjct 22227 CACAAATGACGGAAGTGCT-ATTGATGCCAAATTACACACAGCCACTTCGTCAGGTGCAG 22285 Query 80945 TAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGT 81004 | | || || || ||||| ||||| || ||| ||||| |||||||| | ||||| Sbjct 22286 TGTATTCCACTATCTCCGTACACAAGTTGCTGCTCTTTATTGTGCCCAGGTTCTGCTGGT 22345 Query 81005 TTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTG 81064 |||||||| |||||| || || ||||| ||||||| || || || || || | |||| Sbjct 22346 TTGACTTGCTGTTGCACGCATCTTTGTACAACATGTATGGCGTGCCTGTTTCTATTTGTG 22405 Query 81065 A 81065 | Sbjct 22406 A 22406 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || |||| ||||||||| || |||||||| ||||| ||||||||||| | |||||| Sbjct 21298 GTGCGCAAATAGTACATACCGGTCTTGAGACCCTTTTTCCAGCCGTAGAAATGCATACTT 21357 Query 80098 CTGAG-CTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGAT 80156 | || || | ||| | || || |||||| ||||||||||| || ||||| || Sbjct 21358 GTCAGTTTTTGGTAGT-TTGGATTGTCCATGTGAATGTTCAGAGATTGTGACTGGTCAAT 21416 Query 80157 GAAAGCCCCACGATCTGCCGCCA 80179 || || |||||||| || |||| Sbjct 21417 AAAGGCACCACGATCGGCAGCCA 21439 >seq732 Length=14862 Score = 104 bits (114), Expect = 3e-17 Identities = 133/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 80886 CACAAATGCCGGAAG-GCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTG 80944 |||||||| |||||| ||| | || |||| ||| ||||| ||||| || |||| | | Sbjct 8944 CACAAATGACGGAAGTGCT-ATTGATGCCAAATTACACACAGCCACTTCGTCAGGTGCAG 9002 Query 80945 TAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGT 81004 | | || || || ||||| ||||| || ||| ||||| |||||||| | ||||| Sbjct 9003 TGTATTCCACTATCTCCGTACACAAGTTGCTGCTCTTTATTGTGCCCAGGTTCTGCTGGT 9062 Query 81005 TTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTG 81064 |||||||| |||||| || || ||||| ||||||| || || || || || | |||| Sbjct 9063 TTGACTTGCTGTTGCACGCATCTTTGTACAACATGTATGGCGTGCCTGTTTCTATTTGTG 9122 Query 81065 A 81065 | Sbjct 9123 A 9123 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || |||| ||||||||| || |||||||| ||||| ||||||||||| | |||||| Sbjct 8015 GTGCGCAAATAGTACATACCGGTCTTGAGACCCTTTTTCCAGCCGTAGAAATGCATACTT 8074 Query 80098 CTGAG-CTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGAT 80156 | || || | ||| | || || |||||| ||||||||||| || ||||| || Sbjct 8075 GTCAGTTTTTGGTAGT-TTGGATTGTCCATGTGAATGTTCAGAGATTGTGACTGGTCAAT 8133 Query 80157 GAAAGCCCCACGATCTGCCGCCA 80179 || || |||||||| || |||| Sbjct 8134 AAAGGCACCACGATCGGCAGCCA 8156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570296470168480