Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq492 116 2e-21 seq182 98.7 6e-16 >seq492 Length=46864 Score = 116 bits (128), Expect = 2e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || ||||| ||| || || |||||||| |||||||| ||||| Sbjct 27154 AGACGAAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGGGTTCGT 27213 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || || || || || | ||| |||||||| || || | ||| ||| Sbjct 27214 CCATCTTCAAGTTGCTTTCCTGCGAAGATAAGACGTTGTTGGTCTGGTGGAATTCCTTCC 27273 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || ||| || | ||| ||| | ||| || ||| | ||| || || | || Sbjct 27274 TTATC-CTGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGT 27332 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || || || || ||||| |||||||||||||| ||| Sbjct 27333 AATTGTCTTGCCTGTCAAGGTTTTTACAAAAATCTGCATATTG 27375 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || ||||| ||| || || |||||||| |||||||| ||||| Sbjct 26926 AGACGAAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGGGTTCGT 26985 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || || || || || | ||| |||||||| || || | ||| ||| Sbjct 26986 CCATCTTCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCC 27045 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || ||| || | ||| ||| | ||| || ||| | ||| || || | || Sbjct 27046 TTATC-CTGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGT 27104 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || ||||| || ||||||||||| Sbjct 27105 AATTGTCTTGCCTGTCAAAGTTTTTACGAAAATCTGCAT 27143 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || || || ||||| ||| || || |||||||| |||||||| ||||| Sbjct 26698 AGACGAAGTACTAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGAGTTCGT 26757 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || || || || || | ||| |||||||| || || | || ||| Sbjct 26758 CCATCTTCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATCCCTTCC 26817 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | || ||| | ||| || ||| | ||| || || | || Sbjct 26818 TTGTCCTGGAT-TTTAGCCTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGT 26876 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || ||||| || ||||||||||| Sbjct 26877 AATTGTCTTGCCTGTCAAAGTTTTTACGAAAATCTGCAT 26915 >seq182 Length=36121 Score = 98.7 bits (108), Expect = 6e-16 Identities = 170/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || | || |||||| || |||||||| || || | || || Sbjct 35308 AGACGGAGAACCAAGTGCAATGTAGACTCCTTCTGGATGTTATAGTCGGACAAAGTGCGT 35249 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | |||||| || ||||| || || || ||||| || || || | ||||||| Sbjct 35248 CCGTCTTCTAATTGTTTTCCTGCAAAAATCAATCGTTGTTGATCTGGTGGAATTCCCTCC 35189 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||||| | ||||| | || || || ||| || || | ||| Sbjct 35188 TTGTCCTGGATCTTA-GCCTTAACATTTTCGATGGTATCGGAAGGCTCGACCTCAAGGGT 35130 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTGTATGACGTTGAAA 34727 || || |||||||| || || || |||||||||||||| | || || | | ||||||| Sbjct 35129 GATGGTCTTACCGGTCAAAGTCTTAACAAAAATCTGCATCCT-ATAGT-TCAAGTTGAAA 35072 Query 34728 AA 34729 || Sbjct 35071 AA 35070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314722104911282