Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq492 199 9e-46 seq845 167 5e-36 seq462 167 5e-36 seq182 132 1e-25 >seq492 Length=46864 Score = 199 bits (220), Expect = 9e-46 Identities = 173/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| |||||||| ||||||||||| || | |||||| | ||||||| Sbjct 27160 AGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGGGTTCGTCCATCT 27219 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| |||||||||||||| ||||||||||| || |||| ||||||||| ||| Sbjct 27220 TCAAGTTGCTTTCCTGCGAAGATAAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTATCC 27279 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| |||||||| ||||| || ||| || |||||||| || || ||| Sbjct 27280 TGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTC 27339 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || | || |||||||| | |||||| || Sbjct 27340 TTGCCTGTCAAGGTTTTTACAAAAATCTGCATATT 27374 Score = 194 bits (214), Expect = 4e-44 Identities = 170/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| |||||||| ||||||||||| || | |||||| | ||||||| Sbjct 26932 AGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGGGTTCGTCCATCT 26991 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| ||||||||||| || ||||||||||| || |||| ||||||||| ||| Sbjct 26992 TCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTATCC 27051 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| |||||||| ||||| || ||| || |||||||| || || ||| Sbjct 27052 TGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTC 27111 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||| ||||| || | |||||| Sbjct 27112 TTGCCTGTCAAAGTTTTTACGAAAATCTGCAT 27143 Score = 185 bits (204), Expect = 2e-41 Identities = 168/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| |||||||| ||||||||||| || | ||| || | ||||||| Sbjct 26704 AGTACTAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGAGTTCGTCCATCT 26763 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| ||||||||||| || ||||||||||| || |||| |||||||||||| Sbjct 26764 TCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATCCCTTCCTTGTCC 26823 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || |||||||| ||||| || ||| || |||||||| || || ||| Sbjct 26824 TGGATTTTAGCCTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTC 26883 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||| ||||| || | |||||| Sbjct 26884 TTGCCTGTCAAAGTTTTTACGAAAATCTGCAT 26915 >seq845 Length=10035 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| | ||| ||||| |||||||||||||| || | | || Sbjct 5430 ACGAAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTTTGGATGTTATAGTCTGACAATGT 5371 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || ||||| |||||||| || | |||||||| || || |||| ||| Sbjct 5370 ACGACCATCCTCGAGTTGCTTTCCTGCGAAAATCAATCGTTGTTGATCTGGTGGAATTCC 5311 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||||| || || ||||| || || || ||| ||||||||||| Sbjct 5310 TTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATAGTATCTGAGGGCTCAACCTCGAG 5251 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGT 211122 || || ||||| || || || |||||||| || | ||||||| ||| || Sbjct 5250 GGTAATTGTCTTACCGGTAAGTGTCTTTACGAAGATCTGCATTCTATAGT 5201 >seq462 Length=10693 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| | ||| ||||| |||||||||||||| || | | || Sbjct 5458 ACGAAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTTTGGATGTTATAGTCTGACAATGT 5399 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || ||||| |||||||| || | |||||||| || || |||| ||| Sbjct 5398 ACGACCATCCTCGAGTTGCTTTCCTGCGAAAATCAATCGTTGTTGATCTGGTGGAATTCC 5339 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||||| || || ||||| || || || ||| ||||||||||| Sbjct 5338 TTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATAGTATCTGAGGGCTCAACCTCGAG 5279 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGT 211122 || || ||||| || || || |||||||| || | ||||||| ||| || Sbjct 5278 GGTAATTGTCTTACCGGTAAGTGTCTTTACGAAGATCTGCATTCTATAGT 5229 >seq182 Length=36121 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| || ||||||||||| || | | || | ||| ||||| | || || ||| Sbjct 35287 GTAGACTCCTTCTGGATGTTATAGTCGGACAAAGTGCGTCCGTCTTCTAATTGTTTTCCT 35228 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | |||||||| || || |||| ||| ||||||||||||||||| || Sbjct 35227 GCAAAAATCAATCGTTGTTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTA 35168 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || ||||||||||| || || || ||||| || ||||| ||||| || || | |||| Sbjct 35167 ACATTTTCGATGGTATCGGAAGGCTCGACCTCAAGGGTGATGGTCTTACCGGTCAAAGTC 35108 Query 211098 TTTACAAACACCTGCATTTTATGGTT 211123 || ||||| | |||||| ||| ||| Sbjct 35107 TTAACAAAAATCTGCATCCTATAGTT 35082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159122979905210