Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq492 152 1e-31 seq845 131 4e-25 seq462 131 4e-25 seq1954 102 2e-16 >seq492 Length=46864 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| || ||||| |||| || || || | | ||||| |||||| Sbjct 26704 AGTACTAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGAGTTCGTCCATCT 26763 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| || ||||||||||| || ||||| ||||||||||| Sbjct 26764 TCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATCCCTTCCTTGTCC 26823 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| || ||| ||||| ||||||| || || || | || || ||| Sbjct 26824 TGGATTTTAGCCTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTC 26883 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||||||||| ||| | ||||| Sbjct 26884 TTGCCTGTCAAAGTTTTTACGAAAATCTGCAT 26915 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| || ||||| |||| || || || | | |||| |||||| Sbjct 26932 AGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGGGTTCGTCCATCT 26991 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| || ||||||||||| || ||||| |||||||| || Sbjct 26992 TCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTATCC 27051 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || || ||| ||||| ||||||| || || || | || || ||| Sbjct 27052 TGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTC 27111 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||||||||| ||| | ||||| Sbjct 27112 TTGCCTGTCAAAGTTTTTACGAAAATCTGCAT 27143 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| || ||||| |||| || || || | | |||| |||||| Sbjct 27160 AGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAAAGGGTTCGTCCATCT 27219 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || ||||||||||| ||||||||||| || ||||| |||||||| || Sbjct 27220 TCAAGTTGCTTTCCTGCGAAGATAAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTATCC 27279 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || || ||| ||||| ||||||| || || || | || || ||| Sbjct 27280 TGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTC 27339 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| ||||||| || | ||||| || Sbjct 27340 TTGCCTGTCAAGGTTTTTACAAAAATCTGCATATT 27374 >seq845 Length=10035 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | ||| || || ||||||| || || || | ||| || Sbjct 5430 ACGAAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTTTGGATGTTATAGTCTGACAATGT 5371 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || || ||||| || ||||| || | ||||||||| || || ||||| || Sbjct 5370 ACGACCATCCTCGAGTTGCTTTCCTGCGAAAATCAATCGTTGTTGATCTGGTGGAATTCC 5311 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| ||||||||| ||| ||| ||| || || ||||||| || || || | Sbjct 5310 TTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATAGTATCTGAGGGCTCAACCTCGAG 5251 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATGGT 225721 || || ||||| || || | || |||| ||| | |||||| ||| || Sbjct 5250 GGTAATTGTCTTACCGGTAAGTGTCTTTACGAAGATCTGCATTCTATAGT 5201 >seq462 Length=10693 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | ||| || || ||||||| || || || | ||| || Sbjct 5458 ACGAAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTTTGGATGTTATAGTCTGACAATGT 5399 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || || ||||| || ||||| || | ||||||||| || || ||||| || Sbjct 5398 ACGACCATCCTCGAGTTGCTTTCCTGCGAAAATCAATCGTTGTTGATCTGGTGGAATTCC 5339 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| ||||||||| ||| ||| ||| || || ||||||| || || || | Sbjct 5338 TTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATAGTATCTGAGGGCTCAACCTCGAG 5279 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATGGT 225721 || || ||||| || || | || |||| ||| | |||||| ||| || Sbjct 5278 GGTAATTGTCTTACCGGTAAGTGTCTTTACGAAGATCTGCATTCTATAGT 5229 >seq1954 Length=62475 Score = 102 bits (112), Expect = 2e-16 Identities = 197/288 (68%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTA-TAGGTACTATATTTTCTATGAT 7499 || ||||||||||| |||| ||||| || |||| ||||||| |||| || | | Sbjct 33684 ACATTATATTTAATTTTTGCATTATTTTCAGG-ATTATTAGGTACATTATTATCATTAGT 33742 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 ||||| ||||||||| | ||| ||| ||||| || ||||| ||| | | Sbjct 33743 AATAAGATTAGAATTAATGGGTCCTGGTATACAAATTTTACAAGGTAACCATCAATTCTT 33802 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || || | | || || ||||| ||| | ||| | || |||||| ||||||| | | | Sbjct 33803 TAATGTAGTAGTAACAGCACATGCATTTTTAATGGTATTTTTTTTTATTATGCCTGCTTT 33862 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || || || || |||| || | ||| | ||||| ||||| |||||||| || Sbjct 33863 AATTGGTGGATTTGGTAATTATTTTATACCTGTTATGATAGGTGCAGTAGATATGGCATT 33922 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 ||| || | || ||||| ||||| || ||||||| || ||||| Sbjct 33923 TCCTAGATTAAATAATATTTCATTTTGGCTATTACCGCCATCATTATT 33970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192501344236076