Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq182 178 3e-39 seq492 168 1e-36 seq845 156 9e-33 seq462 156 9e-33 >seq182 Length=36121 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || |||| || || || || || |||||||| ||||| | Sbjct 35318 ACCACCACGCAGACGGAGAACCAAGTGCAATGTAGACTCCTTCTGGATGTTATAGTCGGA 35259 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| || || |||| |||||| || ||||| ||||| |||||||| || || Sbjct 35258 CAAAGTGCGTCCGTCTTCTAATTGTTTTCCTGCAAAAATCAATCGTTGTTGATCTGGTGG 35199 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| || || || | ||||| || || |||| ||||| Sbjct 35198 AATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATTTTCGATGGTATCGGAAGGCTCGAC 35139 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| |||||||| |||||||||||||| || |||||||| Sbjct 35138 CTCAAGGGTGATGGTCTTACCGGTCAAAGTCTTAACAAAAATCTGCAT 35091 >seq492 Length=46864 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| |||||||||| || | || ||||| |||||||| ||||| | Sbjct 26916 ACCACCACGCAGACGAAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGA 26975 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| || ||||| || || || ||||| | |||||||||||| || Sbjct 26976 AAGGGTTCGTCCATCTTCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGG 27035 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| || || ||||| ||||| ||| | || || || || || | ||||| Sbjct 27036 AATTCCTTCCTTATCCTGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGAC 27095 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || ||||| || |||||||| || ||||| |||||||| Sbjct 27096 CTCGAGTGTAATTGTCTTGCCTGTCAAAGTTTTTACGAAAATCTGCAT 27143 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| |||||||| | || | || ||||| |||||||| ||||| | Sbjct 26688 ACCACCACGCAGACGAAGTACTAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGA 26747 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| || ||||| || || || ||||| | |||||||||||| || Sbjct 26748 AAGAGTTCGTCCATCTTCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGG 26807 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| ||||| || || || ||| | || || || || || | ||||| Sbjct 26808 AATCCCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCTGAGGGCTCGAC 26867 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || ||||| || |||||||| || ||||| |||||||| Sbjct 26868 CTCGAGTGTAATTGTCTTGCCTGTCAAAGTTTTTACGAAAATCTGCAT 26915 Score = 159 bits (176), Expect = 7e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| |||||||||| || | || ||||| |||||||| ||||| | Sbjct 27144 ACCACCACGCAGACGAAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGA 27203 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| || ||||| || || || ||||| | |||||||||||| || Sbjct 27204 AAGGGTTCGTCCATCTTCAAGTTGCTTTCCTGCGAAGATAAGACGTTGTTGGTCTGGTGG 27263 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| || || ||||| ||||| ||| | || || || || || | ||||| Sbjct 27264 AATTCCTTCCTTATCCTGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGAC 27323 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| || || ||||| || ||||| || || || || |||||||| || Sbjct 27324 CTCGAGTGTAATTGTCTTGCCTGTCAAGGTTTTTACAAAAATCTGCATATT 27374 >seq845 Length=10035 Score = 156 bits (172), Expect = 9e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || || || || ||||||||||| ||||| | Sbjct 5436 ACCACCACGAAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTTTGGATGTTATAGTCTGA 5377 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || |||||||| ||||| || || || || ||||| |||||||| || || Sbjct 5376 CAATGTACGACCATCCTCGAGTTGCTTTCCTGCGAAAATCAATCGTTGTTGATCTGGTGG 5317 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| ||||||||||| || || | || ||||| || || | || || Sbjct 5316 AATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATAGTATCTGAGGGCTCAAC 5257 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||| || || |||||||| || | ||||| ||||| ||||||||| Sbjct 5256 CTCGAGGGTAATTGTCTTACCGGTAAGTGTCTTTACGAAGATCTGCATT 5208 >seq462 Length=10693 Score = 156 bits (172), Expect = 9e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || || || || ||||||||||| ||||| | Sbjct 5464 ACCACCACGAAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTTTGGATGTTATAGTCTGA 5405 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || |||||||| ||||| || || || || ||||| |||||||| || || Sbjct 5404 CAATGTACGACCATCCTCGAGTTGCTTTCCTGCGAAAATCAATCGTTGTTGATCTGGTGG 5345 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| ||||||||||| || || | || ||||| || || | || || Sbjct 5344 AATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATAGTATCTGAGGGCTCAAC 5285 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||| || || |||||||| || | ||||| ||||| ||||||||| Sbjct 5284 CTCGAGGGTAATTGTCTTACCGGTAAGTGTCTTTACGAAGATCTGCATT 5236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046712994229916