Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq492 168 2e-36 seq845 127 5e-24 seq462 127 5e-24 >seq492 Length=46864 Score = 168 bits (186), Expect = 2e-36 Identities = 161/205 (79%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| |||||| | ||||| || || || || |||||||| || |||||| Sbjct 27140 CAGATTTTCGTAAAAACTTTGACAGGCAAGACAATTACACTCGAGGTCGAGCCCTCAGAT 27081 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||||||| ||||||||||| || |||||||| || || ||||| ||| Sbjct 27080 ACCATTGAAAACGTCAAAGCCAAGATTCAGGATAAGGAAGGAATTCCACCAGACCAACAA 27021 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| || || ||||||||| | || ||| | || |||||| || Sbjct 27020 CGTCTCATCTTCGCAGGAAAGCAACTTGAAGATGGACGAACCCTTTCAGACTATAACATC 26961 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 26960 CAGAAAGAGTCTACTCTTCA-CTTG 26937 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| | ||||| || || || || |||||||| || |||||| Sbjct 27368 CAGATTTTTGTAAAAACCTTGACAGGCAAGACAATTACACTCGAGGTCGAGCCCTCAGAT 27309 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||||||| ||||||||||| || |||||||| || || ||||| ||| Sbjct 27308 ACCATTGAAAACGTCAAAGCCAAGATTCAGGATAAGGAAGGAATTCCACCAGACCAACAA 27249 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| ||||| || || ||||||||| | || ||| | || |||||| || Sbjct 27248 CGTCTTATCTTCGCAGGAAAGCAACTTGAAGATGGACGAACCCTTTCAGACTATAACATC 27189 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 27188 CAGAAAGAGTCTACTCTTCA-CTTG 27165 >seq845 Length=10035 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || || ||||||||||| || |||||| Sbjct 5212 CAGATCTTCGTAAAGACACTTACCGGTAAGACAATTACCCTCGAGGTTGAGCCCTCAGAT 5271 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||| |||||||| |||||||| || || || || ||| Sbjct 5272 ACTATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAACAA 5331 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || ||||| ||||| || ||||| ||||| | || | | || |||||| || Sbjct 5332 CGATTGATTTTCGCAGGAAAGCAACTCGAGGATGGTCGTACATTGTCAGACTATAACATC 5391 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || |||| |||| Sbjct 5392 CAAAAGGAGTCTACTTTGCA-CTTG 5415 >seq462 Length=10693 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || || ||||||||||| || |||||| Sbjct 5240 CAGATCTTCGTAAAGACACTTACCGGTAAGACAATTACCCTCGAGGTTGAGCCCTCAGAT 5299 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||| |||||||| |||||||| || || || || ||| Sbjct 5300 ACTATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAACAA 5359 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || ||||| ||||| || ||||| ||||| | || | | || |||||| || Sbjct 5360 CGATTGATTTTCGCAGGAAAGCAACTCGAGGATGGTCGTACATTGTCAGACTATAACATC 5419 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || |||| |||| Sbjct 5420 CAAAAGGAGTCTACTTTGCA-CTTG 5443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203701063837076