Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq492 93.3 4e-14 seq182 93.3 4e-14 seq845 89.7 5e-13 seq462 89.7 5e-13 >seq492 Length=46864 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||| ||||| ||||||||||| || Sbjct 26917 CCACCACGCAGACGAAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAA 26976 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || || ||||| || ||||| || || || |||||||| | ||| Sbjct 26977 AGGGTTCGTCCATCTTCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGA 27036 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| ||| ||| | || |||| ||| | | || || | ||| || Sbjct 27037 ATTCCTTCCTTATCC-TGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGAC 27095 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| || ||||||||||||||||| Sbjct 27096 CTCGAGTGTAATTGTCTTGCCTGTCAAAGTTTTTACGAAAATCTGCAT 27143 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||| ||||| ||||||||||| || Sbjct 27145 CCACCACGCAGACGAAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAA 27204 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || || ||||| || ||||| || || || |||||||| | ||| Sbjct 27205 AGGGTTCGTCCATCTTCAAGTTGCTTTCCTGCGAAGATAAGACGTTGTTGGTCTGGTGGA 27264 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| ||| ||| | || |||| ||| | | || || | ||| || Sbjct 27265 ATTCCTTCCTTATCC-TGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGAC 27323 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || || |||| || ||||| ||||||||||| || Sbjct 27324 CTCGAGTGTAATTGTCTTGCCTGTCAAGGTTTTTACAAAAATCTGCATATT 27374 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| ||||| ||||||||||| || || || || | || || || ||||| || ||||| Sbjct 26724 CTCTTTCTGGATGTTATAGTCTGAAAGAGTTCGTCCATCTTCAAGTTGCTTTCCTGCGAA 26783 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || || |||||||| | |||| | ||||||||| |||||| ||| | || Sbjct 26784 GATGAGACGTTGTTGGTCTGGTGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTGA-CGT 26842 Query 41791 CGACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 || | | || | ||| ||||| | || || || || || |||| || |||| Sbjct 26843 TTTCAATGGTATCTGAGGGCTCGACCTCGAGTGTAATTGTCTTGCCTGTCAAAGTTTTTA 26902 Query 41850 CGAAAATCTGCAT 41862 ||||||||||||| Sbjct 26903 CGAAAATCTGCAT 26915 >seq182 Length=36121 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 41631 CACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGT 41690 |||| || || || ||||| | |||| |||| || ||||||||| |||||||||| Sbjct 35322 CACCACCACCACGCAGACGGAGAACCAAGTGCAATGTAGACTCCTTCTGGATGTTATAGT 35263 Query 41691 CGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 |||| | ||||| |||| || | || || || || || |||| || ||||| || | Sbjct 35262 CGGACAAAGTGCGTCCGTCTTCTAATTGTTTTCCTGCAAAAATCAATCGTTGTTGATCTG 35203 Query 41751 CGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGAC 41809 |||| | |||||||||| || | || || | ||| | | || ||| | | Sbjct 35202 GTGGAATTCCCTCCTTGTCC-TGGATCTTAGCCTTAACATTTTCGATGGTATCGGAAGGC 35144 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| | || || || ||||| |||| ||||| || ||||||||||| Sbjct 35143 TCGACCTCAAGGGTGATGGTCTTACCGGTCAAAGTCTTAACAAAAATCTGCAT 35091 >seq845 Length=10035 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| |||| || |||||| || ||||||||||| || Sbjct 5435 CCACCACGAAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTTTGGATGTTATAGTCTGAC 5376 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || ||||| ||||| || ||||| |||| || ||||| || | ||| Sbjct 5375 AATGTACGACCATCCTCGAGTTGCTTTCCTGCGAAAATCAATCGTTGTTGATCTGGTGGA 5316 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| ||| ||| | | ||| || | ||| ||| Sbjct 5315 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATAGTATCTGAGGGCTCAACC 5256 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || ||||| || || ||||||||||| |||||||| Sbjct 5255 TCGAGGGTAATTGTCTTACCGGTAAGTGTCTTTACGAAGATCTGCAT 5209 >seq462 Length=10693 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| |||| || |||||| || ||||||||||| || Sbjct 5463 CCACCACGAAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTTTGGATGTTATAGTCTGAC 5404 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || ||||| ||||| || ||||| |||| || ||||| || | ||| Sbjct 5403 AATGTACGACCATCCTCGAGTTGCTTTCCTGCGAAAATCAATCGTTGTTGATCTGGTGGA 5344 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| ||| ||| | | ||| || | ||| ||| Sbjct 5343 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATAGTATCTGAGGGCTCAACC 5284 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || ||||| || || ||||||||||| |||||||| Sbjct 5283 TCGAGGGTAATTGTCTTACCGGTAAGTGTCTTTACGAAGATCTGCAT 5237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462292708224800