Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq162 156 5e-33 seq2 113 5e-20 >seq162 Length=94999 Score = 156 bits (172), Expect = 5e-33 Identities = 372/556 (67%), Gaps = 10/556 (2%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||| ||| ||||||||||| | || | |||||||| || || || Sbjct 12792 CAGGCAAAGTCGGTGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGG 12733 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 |||||||| || |||||||| || ||||| || |||| || ||||| ||| ||||| Sbjct 12732 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGCGGCGAATGAACCACTGAAGAAG 12673 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CGCTGTCATGT 24311 || ||||| || || ||||| || | || | | || | || || ||| | Sbjct 12672 ATACCTTCGACGGCGGCAAAAGCGACGAGACGCTGGGCAAAGGTGGACTCGTCGTCCTCG 12613 Query 24312 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| | || ||||| ||||||||||| || | || || || ||||| ||||| | Sbjct 12612 ATCCAGCGGATG-GCCCAGTCGGCCTTCTTCTTGATGCACGGGATGGTCTCGATAGCGTC 12554 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430 ||||||||| | | || || || | ||| ||||| |||| ||| || | Sbjct 12553 GAAGAGATAGGTGCGCTGCTTGGGCTCCTTGATATAGGTATCGATCAGGAGAGAGTAGGT 12494 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 24490 |||||| |||||||| || || || ||||| |||||||| || | || |||| || Sbjct 12493 TTCCGAGTGAATGTTCTCCATCATGATCTGAAAGCCGTAGAAGCAGCGGGCTTCGGGGAT 12434 Query 24491 CTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 24550 ||| || || | | || || | | | || || || || || |||||| ||| || Sbjct 12433 CTGCACCTCATTGCTGAAGCGCTGGACGAGGTTCTCGTTGACGATACCGTCAGAGGCGGC 12374 Query 24551 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAG---TTTATTCC 24606 || || || | || || ||||| || ||||| | || | || || |||| Sbjct 12373 GAAGAAGGCAAGGACGTGAGAGATAAAGTAGCGCTCGTCGTCGT-TCAGCCTGTTGTTCC 12315 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | || || ||| || || | ||| | |||||| | ||||| || |||||||| |||| Sbjct 12314 AGTCGCCGAGATCCTTGGAGAGATCGATTTCTTCGGCGGTCCAGAACGATGCCTCGGCCT 12255 Query 24667 TTTTATACATATTCCA 24682 | || ||||| | ||| Sbjct 12254 TCTTGTACATTTGCCA 12239 >seq2 Length=859439 Score = 113 bits (124), Expect = 5e-20 Identities = 202/287 (70%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 54104 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTC 54163 |||||| || ||||||||| | | | || | |||||||| || | ||| || | Sbjct 394032 TTCTTTCGGAGGTCGAGGAACTCGAACACGTCCGCGTGCCACGGCTCGAGGTAGATTGCG 393973 Query 54164 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 54223 | | | || |||| |||||| || ||||| || | ||| || || ||||| || | || Sbjct 393972 AAAGCACCGGGCCTTTTGTTGCCGCCCTGGTCGACGTACCTGGCCGTGTTGTTGAACACC 393913 Query 54224 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 54283 |||| ||| || || | ||||||||| | |||||||||||| | ||| || || | Sbjct 393912 CTCAGCATCGGGATGAGACCATTGGAAGTACCATTGGTCCC-GCGATGTACGAGCCCGTA 393854 Query 54284 GCACGAATATT-ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCA 54342 | ||| ||||| | ||| ||||| || | || || | || ||||| |||||||| Sbjct 393853 GAACGGATATTGTGGACGTGA-AGACCGAT-ACACCGGCAGTCTTCGAGATCAATGCGCA 393796 Query 54343 TCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATG 54388 || |||| ||||| ||||| || || ||||| |||||| ||||| Sbjct 393795 -GGTCTTAAGGGTATCGTAGATACCTTCAATACTGTCATCCTTCATG 393750 Score = 100 bits (110), Expect = 3e-16 Identities = 152/215 (71%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 52796 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 52855 |||| ||| | ||||||||||||| || || |||| | || |||| |||||||||| Sbjct 395344 TCCTGGTCGACAGTGAATTGAATGGCGGCAGAGGCGGCCATGGTGCGTAAATAGTACATT 395285 Query 52856 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTC 52915 ||||| || ||||| |||| ||||| || |||||| || ||||| | | Sbjct 395284 CCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATAGACGTAAGTTT-ACCCATGTT 395226 Query 52916 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 52975 || ||| || ||||| |||| || || || || |||||||| || ||||||||| Sbjct 395225 GGGTCTTTAATGTGGATGTTCAGCGACTGGCTCTGGTCGATGAACGCGGACCTGTCTGCC 395166 Query 52976 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCA 53010 ||||| | ||||| ||||||| || ||||| Sbjct 395165 GCCATGTCGATGATTACTTTTTGTGAGATCTCCCA 395131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718542333760