Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq162 401 6e-107 seq346 136 4e-27 seq4 96.9 4e-15 seq249 95.1 1e-14 seq269 87.8 2e-12 >seq162 Length=94999 Score = 401 bits (444), Expect = 6e-107 Identities = 542/739 (73%), Gaps = 26/739 (4%) Strand=Plus/Plus Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698 |||| |||||||| ||||||||||| ||||||||||||| ||| || | || || ||| Sbjct 12239 TGGCAAATGTACAAGAAGGCCGAGGCATCGTTCTGGACCGCCGAAGAAATCGATCTCTCC 12298 Query 116699 AAGGA-CACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||||| | || |||||||| | | |||||||| |||||||| | || ||| || Sbjct 12299 AAGGATCTCG-GCGACTGGAACAACAGGCTGAACGACGACGAGCGCTACTTTATCTCTCA 12357 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||| || ||||| ||||||||| ||||| |||||||||||||| || ||| |||| || Sbjct 12358 CGTCCTTGCCTTCTTCGCCGCCTCTGACGGTATCGTCAACGAGAACCTCGTCCAGCGCTT 12417 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | | ||||||||| | |||| || || ||||||||||||||||||||| ||||| Sbjct 12418 CAGCAATGAGGTGCAGATCCCCGAAGCCCGCTGCTTCTACGGCTTTCAGATCATGATGGA 12477 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTCGG 116930 |||| | |||||||||| || || ||| ||||| || || | | || | Sbjct 12478 GAACATTCACTCGGAAACCTACTCTCTCCTGATCGATACCTATATCAAGGAGCCCA---- 12533 Query 116931 AGGAGAAGCTCCGTT-TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989 || || || || | | || |||| |||||||| || |||||| |||| |||||||| Sbjct 12534 AGCAGC-GCACCTATCTCTTCGACGCTATCGAGACCATCCCGTGCATCAAGAAGAAGGCC 12592 Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 || ||||| | |||||||||| | | ||| || |||| | | |||| || || || Sbjct 12593 GACTGGGCCATCCGCTGGATCGAGGACGACGAGTCCACCTTTGCCCAGCGTCTCGTCGCT 12652 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 || || |||||||| || ||||||| || ||||||||||| || ||||||||| Sbjct 12653 TTTGCCGCCGTCGAAGGTATCTTCTTCAGTGGTTCATTCGCCGCCATCTTCTGGCTCAAG 12712 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 || || || ||||||||||||||||| ||| |||||||||||||||| | ||||||||| Sbjct 12713 AAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGT 12772 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCG 117229 || || |||||||||||| | || |||| ||| | || | |||||| || | Sbjct 12773 CTCCACACCGACTTTGCCTGCCTCCTCTTCAGCCATCT-CAACAACAGCCGAGCAAGGAG 12831 Query 117230 CGCGTCAGGGAGATCGTCACC---GACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286 |||| | || | |||| | || || || | || |||||| ||||| || || Sbjct 12832 GCCGTC--GAAGCT-GTCATCGTTGAGGCCGTTACGATTGAGCAGGAGTTCCTTACGGAG 12888 Query 117287 GCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGT 117344 || || || ||||| ||| |||| |||| || || | |||| |||||||||||||| Sbjct 12889 GCTCT-CCCGTGCGCTCTCTTGGGCATCAA-CGCCAAGCTGATGAAGCAATACATCGAGT 12946 Query 117345 TCGTCGCCGACAGGCTGCT 117363 ||||||||||| | ||||| Sbjct 12947 TCGTCGCCGACCGCCTGCT 12965 >seq346 Length=29424 Score = 136 bits (150), Expect = 4e-27 Identities = 160/211 (76%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || ||||||||||| ||||||||| | || || || | | Sbjct 4686 AATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTTGAGTCGTC 4745 Query 40749 CGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||| | | || |||| |||||| || || | || || |||| |||||| |||| | Sbjct 4746 CGATACGATTGACAACG-TCAAGGCGAAGATCCAGGATAAGGAGGT-ATCCCC-CGGATC 4802 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || ||||||| ||||| || ||||| || || | ||||||||| ||||||| Sbjct 4803 AGCAGCGTCTCATCTTTGCGGGAAAGCAGCTTGAGGATGGCCGCACCCTCTCGGACTACA 4862 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || |||||||| || Sbjct 4863 ACATCCAGAAGGAATCTACTCTGCATCTCGT 4893 Score = 113 bits (124), Expect = 5e-20 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||||| ||||| || || ||||| |||| || || || | Sbjct 4913 ATGCAAAT-TTCGTCAAGACGCTTACGGGAAAGACTATCACGCTCGAGGTTGAGTCCTCT 4971 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || |||| ||||| || ||||| ||| || | ||| Sbjct 4972 GACACGATAGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGCATTCCCCCG-ATCAG 5030 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| || || ||||| || |||| || || || ||| || ||| Sbjct 5031 CAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGGACTCTGTCCGATTATAAC 5090 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 5091 ATCCAGAAGGAGTCCACCCTTCACCTTGT 5119 >seq4 Length=583001 Score = 96.9 bits (106), Expect = 4e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 40708 ACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTC 40767 || ||||||||||| ||||||||| |||| ||||| || |||||| | | | | || Sbjct 25304 ACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTC 25245 Query 40768 AAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCG 40827 |||| ||||| | ||||| || ||||||||| |||||||||| || || |||| ||| Sbjct 25244 AAGGCCAAAATCCAAGACAAGGAAGGCATCCCC-CGGACCAGCAGCGTCTGATCTTCGC- 25187 Query 40828 GGCAAACAGCTGGACGA 40844 || || ||||| || || Sbjct 25186 GGAAAGCAGCTTGAGGA 25170 >seq249 Length=58106 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || ||||||||||| | ||||||| |||| || || || Sbjct 56307 AAAATGCAGATCTTCGTCAAGACCCTCACGGGCAAGA-CATCACCCTCGAGGTTGAGTCC 56365 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | ||||| || |||||| ||| Sbjct 56366 TCTGACACCATCAACAATATCAAGGCCAAGATCCAAGACAAGGAATACATCCCGCTCGAC 56425 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| || || ||||| || | | ||||| || |||||| Sbjct 56426 CAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAAAATGGCCGCACGCTGTCCGACTAT 56485 Query 40867 AACATCCAGAAG 40878 |||||||| ||| Sbjct 56486 AACATCCAAAAG 56497 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 40701 CGTAAAAACGCTCACGGGCAAAA-CCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 ||| || || |||||| | |||| ||||||||||||| || || | |||||| | Sbjct 56526 CGTCAAGACCCTCACGAGTAAAAACCATCACCGTCGAGGTTGAGTCTTCCGACACTATCG 56585 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | |||||| || ||| | | | || |||||||| | ||| || | || || | Sbjct 56586 ACAGTATCAAGGCTAAGATTTAGGGCGAGGAAGGCATCCCGCCCGACTAGTAGCGTCTGA 56645 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC-AACATCCAGAAG 40878 ||| ||| || || ||||| || || | ||||| || ||||||| |||||||||||| Sbjct 56646 TCTTCGCCGGAAAGCAGCTCGAAGATGGCCGCACGCTGTTCGACTACAAACATCCAGAAG 56705 Query 40879 GAGGCCACGCTGCATCTAGT 40898 ||| |||| || || || || Sbjct 56706 GAGTCCACCCTCCACCTCGT 56725 >seq269 Length=51757 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/192 (71%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 || ||||| || ||||| ||||| || | ||||| |||| || || || | |||| Sbjct 20884 ATTTTCGTCAAGACGCTTACGGGAAAGGCTATCACGCTCGAGGTTGAGTCCTCGGACATG 20943 Query 40756 GT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814 || | |||| | | | || || | || || ||| | |||||| || |||||||||| Sbjct 20944 GTAGGCAACGTT-AGGTCTAAGATCCAGGATAATGAGTGTATCCCCCCG-ACCAGCAACG 21001 Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874 ||||||| ||| || |||||||| || |||| | ||||| || ||||| ||||| Sbjct 21002 TCTCATCTTCGCCGGTAAACAGCTTGAGGACGGAAGGACCCTTTCTGATTACAATATCCA 21061 Query 40875 GAAGGAGGCCAC 40886 |||||| |||| Sbjct 21062 GAAGGAATCCAC 21073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216546621120