Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq346 100 2e-16 seq249 91.5 1e-13 seq4 89.7 4e-13 >seq346 Length=29424 Score = 100 bits (110), Expect = 2e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || ||||| |||||| || ||| || ||||||||||| || || Sbjct 5107 GTGGACTCCTTCTGGATGTTATAATCGGACAGAGTCCGGCCGTCCTCGAGCTGCTTACCG 5048 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||||||||||||||||||||| || ||||| |||||||| ||| || || Sbjct 5047 GCGAAGATGAGACGCTGCTGATCGGG-GGAATGCCTTCCTTGTCCTGAATCTTCGCCTTG 4989 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| | | ||| ||||||| || | || || || || || || Sbjct 4988 ACATTGTCTATCGTGTCAGAGGACTCAACCTCGAGCGTGATAGTCTTTCCCGTAAGCGTC 4929 Query 118722 TTTACAAAAATCTGCAT 118738 || || |||| ||||| Sbjct 4928 TTGAC-GAAATTTGCAT 4913 >seq249 Length=58106 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/204 (71%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| ||| |||||||| || |||| || ||| || ||||| || |||||||| Sbjct 56510 GTGGAGGGTA-ACTCTTTTGGA-TGTTATAGTCGGACAGCGTGCGGCCATTTTCGAGCTG 56453 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||| ||| |||| ||||||||||| ||| | || ||| ||||||||| || || Sbjct 56452 CTTTCCGGCGAAGATCAGACGCTGCTGGTCGAGCGGGATGTATTCCTTGTCTTGGATCTT 56393 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || | | | || |||||| | | ||| ||||||| ||| | || ||||| || Sbjct 56392 GGCCTTGATATTGTTGATGGTGTCAGAGGACTCAACCTCGAGGGTGA-TGTCTTGCCCGT 56334 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| Sbjct 56333 GAGGGTCTTGACGAAGATCTGCAT 56310 >seq4 Length=583001 Score = 89.7 bits (98), Expect = 4e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 |||||| ||||| ||||| ||| |||| ||||||||||| || || || ||||| ||||| Sbjct 25169 ATCCTCAAGCTGCTTTCC-GCGAAGATCAGACGCTGCTGGTCCGGGGG-ATGCCTTCCTT 25226 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 |||| ||||| || || | |||| |||||| | | ||||||||||| ||| | Sbjct 25227 GTCTTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGAT 25286 Query 118703 CGTTTTGCCGGTCAGAGT 118720 || ||||| || || || Sbjct 25287 GGTCTTGCCCGTGAGGGT 25304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828221629104