Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq162 154 2e-32 seq2 118 1e-21 >seq162 Length=94999 Score = 154 bits (170), Expect = 2e-32 Identities = 373/557 (67%), Gaps = 12/557 (2%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || ||| ||| ||||||||||| | || | |||||||| || || || Sbjct 12792 CAGGCAAAGTCGGTGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGG 12733 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 |||||||| || |||||||| || ||||| || |||| || ||||| ||| ||||| Sbjct 12732 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGCGGCGAATGAACCACTGAAGAAG 12673 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT----GTCATG 36333 || ||||| || || ||||| || | || | || || | || ||| ||| | Sbjct 12672 ATACCTTCGACGGCGGCAAAAGCGACGAGACGCTGGGCAAAGGTGG-ACTCGTCGTCCTC 12614 Query 36334 TATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 36392 ||||| | || ||||| ||||||||||| || | || || || ||||| ||||| | Sbjct 12613 GATCCAGCGGATG-GCCCAGTCGGCCTTCTTCTTGATGCACGGGATGGTCTCGATAGCGT 12555 Query 36393 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 36452 ||||||||| | | || || || | ||| ||||| |||| ||| || Sbjct 12554 CGAAGAGATAGGTGCGCTGCTTGGGCTCCTTGATATAGGTATCGATCAGGAGAGAGTAGG 12495 Query 36453 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 36512 ||||||| |||||||| || || || ||||| |||||||| || | || |||| | Sbjct 12494 TTTCCGAGTGAATGTTCTCCATCATGATCTGAAAGCCGTAGAAGCAGCGGGCTTCGGGGA 12435 Query 36513 TCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 36572 |||| || || | | || || | | | || || || || || |||||| ||| | Sbjct 12434 TCTGCACCTCATTGCTGAAGCGCTGGACGAGGTTCTCGTTGACGATACCGTCAGAGGCGG 12375 Query 36573 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-TTGGTGTTAG---TTTATTC 36628 | || || || | || || ||||| || |||| | || | || || ||| Sbjct 12374 CGAAGAAGGCAAGGACGTGAGAGATAAAGTAGCGCTCGTCGTCGT-TCAGCCTGTTGTTC 12316 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 || || || ||| || || | ||| | |||||| | ||||| || |||||||| ||| Sbjct 12315 CAGTCGCCGAGATCCTTGGAGAGATCGATTTCTTCGGCGGTCCAGAACGATGCCTCGGCC 12256 Query 36689 TTTTTATACATATTCCA 36705 || || ||||| | ||| Sbjct 12255 TTCTTGTACATTTGCCA 12239 >seq2 Length=859439 Score = 118 bits (130), Expect = 1e-21 Identities = 203/287 (71%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 66135 TTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCC 66194 |||||| || ||||||||| | | | || |||||||| || | ||| || || Sbjct 394032 TTCTTTCGGAGGTCGAGGAACTCGAACACGTCCGCGTGCCACGGCTCGAGGTAGATTGCG 393973 Query 66195 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 66254 | | | || |||| |||||| || ||||| || | ||| || || ||||| || | || Sbjct 393972 AAAGCACCGGGCCTTTTGTTGCCGCCCTGGTCGACGTACCTGGCCGTGTTGTTGAACACC 393913 Query 66255 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTT 66314 |||| ||| || || | ||||||||| |||||||||||||| | ||| || || | Sbjct 393912 CTCAGCATCGGGATGAGACCATTGGAAGTACCATTGGTCCC-GCGATGTACGAGCCCGTA 393854 Query 66315 GCACGAATATT-ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 66373 | ||| ||||| | ||| ||||| | | | || || | || ||||| |||||||| Sbjct 393853 GAACGGATATTGTGGACGTGA-AGACCGA-TACACCGGCAGTCTTCGAGATCAATGCGCA 393796 Query 66374 TCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATG 66419 || |||| ||||| ||||| || || ||||| |||||| ||||| Sbjct 393795 -GGTCTTAAGGGTATCGTAGATACCTTCAATACTGTCATCCTTCATG 393750 Score = 105 bits (116), Expect = 9e-18 Identities = 153/215 (71%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 64827 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 64886 |||| ||| | ||||||||||||| || || |||| | || |||| |||||||||| Sbjct 395344 TCCTGGTCGACAGTGAATTGAATGGCGGCAGAGGCGGCCATGGTGCGTAAATAGTACATT 395285 Query 64887 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 64946 ||||| || ||||| |||| ||||| || |||||| ||| ||||| | | Sbjct 395284 CCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATAGACGTAAGTTT-ACCCATGTT 395226 Query 64947 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 65006 || ||| || ||||| |||| || || || || |||||||| || ||||||||| Sbjct 395225 GGGTCTTTAATGTGGATGTTCAGCGACTGGCTCTGGTCGATGAACGCGGACCTGTCTGCC 395166 Query 65007 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCA 65041 ||||| | ||||| ||||||| || ||||| Sbjct 395165 GCCATGTCGATGATTACTTTTTGTGAGATCTCCCA 395131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658169410410080