Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq346 105 7e-18 seq2 87.8 2e-12 >seq346 Length=29424 Score = 105 bits (116), Expect = 7e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || | ||||| || ||||| || || |||||||||||| | Sbjct 5137 CCGCCACGGAGACGAAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGAC 5078 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| |||||||| ||||| || |||| ||||| ||||||||||| || Sbjct 5077 AGAGTCCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCGGG-GGA 5019 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| | || | || | | || | ||||| | || ||| || Sbjct 5018 ATGCCTTCCTTGTC-CTGAATCTTCGCCTTGACATTGTCTATCGTGTCAGAGGACTCAAC 4960 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | ||||| || || | ||| || ||||| ||||||||| Sbjct 4959 CTCGAGCGTGATAGTCTTTCCCGTAAGCGTCTTGACGAA-ATTTGCATA 4912 >seq2 Length=859439 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 10/208 (5%) Strand=Plus/Minus Query 152754 GTACGAAAATAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCGTACATGTGCACCGAC 152813 || || ||||||||||| ||||||||||| || | ||||||||| | ||||| ||| Sbjct 395302 GTGCGTAAATAGTACATTCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATAGAC 395243 Query 152814 GCCATCTTAGCCAAAGTAGGGTCGGCCATGTACACGTTAAACGATTGACTTTGATCAATA 152873 | | ||| || | || ||||| |||| | ||| | ||| || || || || || Sbjct 395242 GTAAGTTTA-CCCATGTTGGGTCTTTAATGTGGATGTTCAGCGACTGGCTCTGGTCGATG 395184 Query 152874 AATGCGCCTCTATCTGCTGCCATGTCGATCATGAATTTTCCGTTGTTGTGCCAGCATTCC 152933 || ||| || ||||| ||||||||||| || | ||| ||||| || ||| Sbjct 395183 AACGCGGACCTGTCTGCCGCCATGTCGATGATTACTTT-------TTGTG--AGATCTCC 395133 Query 152934 CAGATTGTCATGTACAGCTTTTTAATGT 152961 |||| ||| |||||||| ||| |||| Sbjct 395132 CAGACGGTCTTGTACAGCGATTTTATGT 395105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496061445270400