Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq162 150 2e-31 seq2 125 1e-23 >seq162 Length=94999 Score = 150 bits (166), Expect = 2e-31 Identities = 371/557 (67%), Gaps = 12/557 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||| ||| |||||||| || | || | |||||||| || || || Sbjct 12792 CAGGCAAAGTCGGTGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGG 12733 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| || |||||||| || ||||| || || | || ||||| ||| |||||| Sbjct 12732 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGCGGCGAATGAACCACTGAAGAAG 12673 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT----GTCATG 42240 || ||||| || || ||||| || | || | || || | || ||| ||| | Sbjct 12672 ATACCTTCGACGGCGGCAAAAGCGACGAGACGCTGGGCAAAGGTGG-ACTCGTCGTCCTC 12614 Query 42241 TATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299 ||||| | || ||||| ||||||||||| || | || || || || || || || | Sbjct 12613 GATCCAGCGGATG-GCCCAGTCGGCCTTCTTCTTGATGCACGGGATGGTCTCGATAGCGT 12555 Query 42300 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 ||||||||| | | || || || | ||| |||||||||| ||| || Sbjct 12554 CGAAGAGATAGGTGCGCTGCTTGGGCTCCTTGATATAGGTATCGATCAGGAGAGAGTAGG 12495 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 |||| || |||||||| || || |||||||| |||||||| || | ||| |||| | Sbjct 12494 TTTCCGAGTGAATGTTCTCCATCATGATCTGAAAGCCGTAGAAGCAGCGGGCTTCGGGGA 12435 Query 42420 CCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTG 42479 ||| || || | | || || | | | || ||||| || || |||||| ||| | Sbjct 12434 TCTGCACCTCATTGCTGAAGCGCTGGACGAGGTTCTCGTTGACGATACCGTCAGAGGCGG 12375 Query 42480 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA----TTTATTC 42535 | || || || | || || ||||| || |||| || ||| | || ||| Sbjct 12374 CGAAGAAGGCAAGGACGTGAGAGATAAAGTAGCGCTCGT-CGTCGTTCAGCCTGTTGTTC 12316 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 || || || ||| || || | ||| | |||||| | ||||| || ||||| || ||| Sbjct 12315 CAGTCGCCGAGATCCTTGGAGAGATCGATTTCTTCGGCGGTCCAGAACGATGCCTCGGCC 12256 Query 42596 TTTTTATACATATTCCA 42612 || || ||||| | ||| Sbjct 12255 TTCTTGTACATTTGCCA 12239 >seq2 Length=859439 Score = 125 bits (138), Expect = 1e-23 Identities = 246/356 (69%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 72028 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCG 72087 ||||| || || || || | ||| || || || || || |||| || ||| || Sbjct 394101 TTCATGAACAGGTCGGGCACCCAGAGGGCGTAGAACAGGTCCCTGGCCCTGACCTCTTCC 394042 Query 72088 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 72147 || || |||||| || ||||||||| | | | || | |||||||| || | | Sbjct 394041 TTACCGTGGTTCTTTCGGAGGTCGAGGAACTCGAACACGTCCGCGTGCCACGGCTCGAGG 393982 Query 72148 TATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 72207 || || || | | | || |||| |||||| || ||||| || | ||| || || ||||| Sbjct 393981 TAGATTGCGAAAGCACCGGGCCTTTTGTTGCCGCCCTGGTCGACGTACCTGGCCGTGTTG 393922 Query 72208 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 72267 || | || |||| ||| || || | ||||||||| | |||||||||||| | ||| || Sbjct 393921 TTGAACACCCTCAGCATCGGGATGAGACCATTGGAAGTACCATTGGTCCC-GCGATGTAC 393863 Query 72268 CTTCCACTGGCACGAATATTG-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 72326 || | | ||| |||||| | ||| ||||| | | | || || | || ||||| Sbjct 393862 GAGCCCGTAGAACGGATATTGTGGACGTGA-AGACCGA-TACACCGGCAGTCTTCGAGAT 393805 Query 72327 TAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATG 72381 |||||||| || |||| ||||| ||||| || || ||||| |||||| ||||| Sbjct 393804 CAATGCGCA-GGTCTTAAGGGTATCGTAGATACCTTCAATACTGTCATCCTTCATG 393750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135743633120