Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq162 226 4e-54 seq2 179 5e-40 seq91 95.1 2e-14 >seq162 Length=94999 Score = 226 bits (250), Expect = 4e-54 Identities = 385/555 (69%), Gaps = 6/555 (1%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| |||||||||| ||||| |||| || || ||||| | |||||| ||||||| ||| Sbjct 12239 TGGCAAATGTACAAGAAGGCCGAGGCATCGTTCTGGACCGCCGAAGAAATCGATCTCTCC 12298 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 ||||| || ||| ||| | | | ||| || ||||| | ||||| || ||| Sbjct 12299 AAGGATCTCGGCGACTGGAACAACAGGCTGAACGACGACGAGCGCTACTTTATCTCTCAC 12358 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTC 125201 | | |||||||| |||| ||| || || ||||||||||| || || | || ||| Sbjct 12359 GTCCTTGCCTTCTTCGCCGCCTCTGACGGTATCGTCAACGAGAACCTCGTCCAGCGCTTC 12418 Query 125202 TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAG 125261 | ||| || || || || | ||||| ||||| || || |||||||| ||| Sbjct 12419 AGCAATGAGGTGCAGATCCCCGAAGCCCGCTGCTTCTACGGCTTTCAGATCATGATGGAG 12478 Query 125262 AACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC---GCAA 125318 ||| | |||||||||| |||||| ||||| || | || || || || ||| Sbjct 12479 AACATTCACTCGGAAACCTACTCTCTCCTGATCGATACCTATATCAAGGAGCCCAAGCAG 12538 Query 125319 CGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAA 125378 || | | || ||||| |||| ||||| || | |||| || || ||||| | Sbjct 12539 CGCA--CCTAT-CTCTTCGACGCTATCGAGACCATCCCGTGCATCAAGAAGAAGGCCGAC 12595 Query 125379 TGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTC 125438 |||| || || |||||||| |||||| |||| | | ||| | | || || || || Sbjct 12596 TGGGCCATCCGCTGGATCGAGGACGACGAGTCCACCTTTGCCCAGCGTCTCGTCGCTTTT 12655 Query 125439 GCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAG 125498 |||||||| || || |||||||| ||| || || |||||||| |||||||||||| Sbjct 12656 GCCGCCGTCGAAGGTATCTTCTTCAGTGGTTCATTCGCCGCCATCTTCTGGCTCAAGAAG 12715 Query 125499 CGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTA 125558 || || ||||||||||| ||||| | |||||| | || || || |||||||| || Sbjct 12716 CGTGGTCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGTCTC 12775 Query 125559 CACTGTGACTTTGCC 125573 ||| ||||||||| Sbjct 12776 CACACCGACTTTGCC 12790 >seq2 Length=859439 Score = 179 bits (198), Expect = 5e-40 Identities = 356/514 (69%), Gaps = 16/514 (3%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||||||||| ||| |||| || ||| | || ||||| | || || |||||||||||| Sbjct 393944 CAGGGCGGCAACAAAAGGCCCGGTGCTTTCGCAATCTACCTCGAGCCGTGGCACGCGGAC 394003 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || |||| | || || ||| || ||||||| | ||||||||| Sbjct 394004 GTGTTCGAGTTCCTCGACCTCCGAAAGAACCACGGTAAGGAAGAGGTCAGGGCCAGGGAC 394063 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052 |||| || || ||||||||||| || ||||||||||| | ||| | |||||| Sbjct 394064 CTGTTCTACGCCCTCTGGGTGCCCGACCTGTTCATGAAGAGGGTCGAGCAGAACGGTG-- 394121 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||||||| | ||||| || | | |||| || || ||| | ||||| ||| Sbjct 394122 -ACTGGAGCCTGTTCTGCCCTAACGAGGCTACCGGCCTTTCGGATGTTTACGGCGAGGAG 394180 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAG-ACGA--GTCGA 97168 || ||| | ||||| ||||||| |||| ||| | || | | | || ||| | Sbjct 394181 TTCGAGAGC-TCTACACCCGCTACGAG-AAGACCGCCGGCCTCGCGCGCAGGACCGTCAA 394238 Query 97169 TGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACA 97227 || | |||| ||| || | ||||| || ||| ||| ||||| ||||| ||||||| Sbjct 394239 GGCGC-AGAAGCTG-GGTATGCCATTCTGGAGGCGCAGACCGAGACGGGAACCCCGTACA 394296 Query 97228 TTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGG 97287 | || |||||||| || || || |||||||| || ||||||| |||||| Sbjct 394297 TGCTGTACAAGGACGCCTGCAACAAGAAGAGCAACCAGAAGAACCTGGGCACGATCAAGA 394356 Query 97288 GCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCG 97347 |||| || ||||||||||| || || |||||| || | || || ||| || || ||| Sbjct 394357 GCTCTAACCTGTGCACGGAGATCGTCGAGTACTCCGC-CCCGATGAGGTAGCCGTGTGCA 394415 Query 97348 TTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 || || ||| || ||||| | ||| || || Sbjct 394416 ACCTCGCGTCGATCGCCCTGCCGACGTTCGTGGA 394449 >seq91 Length=152461 Score = 95.1 bits (104), Expect = 2e-14 Identities = 170/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 70044 TCGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGC 70103 ||||| |||| || | |||| ||||| || || || || ||||| ||||||||| ||| Sbjct 104756 TCGGCCTCACGGAGCGTAAAGAAGGCGACCTCGGACCGGTCTACGGTTTCCAGTGGCGGC 104697 Query 70104 ACTCGGGCACCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCA-A 70162 | | || || | ||||| ||||||||||| || ||| |||| |||| || ||||| Sbjct 104696 ATTTCGGTGCCGAATATGTGGACTGCGAGACGGATTATACGGGGAAGGGAGTGGATCAGC 104637 Query 70163 TTGCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGC 70222 | || || | || | | ||||||| | ||| ||||||||||| || ||| Sbjct 104636 TCGCGGA-GGTTATACATAAGCTCAAGAATAGTCCGTACGATAGGAGGATTATACTGTCG 104578 Query 70223 TCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAG 70282 | ||||| || ||||| | | ||||| || || |||||||| || || ||| Sbjct 104577 GCGTGGAACGTCGCGGATTTAAATAAGATGGCGCTGCCGCCGTGTCATATGTTCGCGCAG 104518 Query 70283 TTTTAC 70288 || ||| Sbjct 104517 TTCTAC 104512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055383545120