Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2 223 3e-53 seq162 91.5 1e-13 seq4 87.8 2e-12 seq346 86.0 6e-12 >seq2 Length=859439 Score = 223 bits (246), Expect = 3e-53 Identities = 940/1447 (65%), Gaps = 43/1447 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 || |||| ||| || |||||||| | || || || | || | ||| |||||| ||||| Sbjct 394994 TTTACGATCTGGAATTCGCCGGCGAGGACGCGGCGGGAGTAGATGTTGGACGTGTAGGGT 394935 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| || ||||| || | || | ||||| |||||| ||| || Sbjct 394934 TCGAAGCACTCGTTGAAACCGAGGATCTGGGACGTGGAAGCGGTAGGCATGGGCGCGACG 394875 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || ||||||| ||||||||| || | |||||| || | |||| ||||| Sbjct 394874 AGGAG-GAGTTGCGCATGCCGTGCTTGGAGACTTTTTCCTTGAGGGAGTCCCAGTCCCAG 394816 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 ||| ||||| | ||| ||||||||||| |||||| ||| | |||||| || Sbjct 394815 AGCTCGGTCGGG-TGACGCCCCACATGTCGAACTGCAGCTGGCCTTTGCTGGCCGGTGAA 394757 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG-GCGAGCTCGCAACTCGCCTCCAGAGC 145356 || | ||||| ||| |||| || | || ||||| ||| || || | || Sbjct 394756 CCCTCGAAGGAGTCGTACTTGCCA-AACTCCTGCGCGAGTTCGACGGAGGCTTCGACGGC 394698 Query 145357 GCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTT-CATCGCTCTCGT 145415 |||| || || |||||| || || ||| ||| || | || | | || ||| Sbjct 394697 GCCGTGGTAGATCGTCTCGAAGATCTGGAGGTTCAGCTGCTTAGCCTGCGGCGAG-TCGA 394639 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 ||||||| |||||| | ||| ||||| ||||| ||||| | || ||| | || || | Sbjct 394638 ACGGCATACGCAGCGCCAAAAAGGCATCCGCGAGACCCTGAACGCCGACGGC-ATAGGTC 394580 Query 145476 GATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATTACGGTCGATAATT 145534 || | |||| |||| || ||||| || || | | | || ||||| || Sbjct 394579 TGTGGCGGAAGTTGGAGTTCCTGGCTC-CTCGACGGGGTAGTAGTTGACC-TCGATGATC 394522 Query 145535 TTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAAC-CG 145593 || |||| || || || || ||||| || | || | | ||| | ||||| || || Sbjct 394521 TTGTTCAGATTGCGGACGACGACCTTCGTCACGTCGTGGAGCTTCTGGAAGTCGTACTCG 394462 Query 145594 AGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGT 145653 | ||| | | | |||| | | | |||||||||||| | || || || || Sbjct 394461 GACTTCG-CGATGTCCACGAACGTCGGCAGGGCGATCGACGCGAGGTTGCACACGGCTAC 394403 Query 145654 CTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCC 145713 ||| |||| | || ||| | |||||||| | ||||| || | ||||| || || Sbjct 394402 CTCATCGGGG-CGGAGTACTCGACGATCTCCGTGCACAGGTTAGAGCTCTTGATCGTGCC 394344 Query 145714 CAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCC 145773 ||| || | ||| || || ||| ||||||| ||||||||||| ||||||||||| || Sbjct 394343 CAGGTTCTTCTGGTTGCTCTTCTTGTTGCAGGCGTCCTTGTACAGCATGTACGGGGTTCC 394284 Query 145774 AGTCTCCACCTGCGTCTCCACGATA--AAACGGTGCAAGTCCTGCGC----ACGCACCTG 145827 ||||| ||||| ||||| || | || || | |||||| ||| |||| Sbjct 394283 CGTCTCGGTCTGCGCCTCCAGAATGGCATACCCAGC---TTCTGCGCCTTGACGGTCCTG 394227 Query 145828 CTGCTGGTAGC-GGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGT 145886 | || | || ||| |||||| |||| |||||||||| || ||| | |||| Sbjct 394226 C-GCGCGAGGCCGGCGGTCTTCT-CGTAGCGGGTGTAGAGCTC-TCGAACTCCTCGCCGT 394170 Query 145887 AGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGT 145946 | ||| || ||||||| | || ||| || || | ||| ||| | ||||| | Sbjct 394169 AAACATCCGAAAGGCCGGTAGCCTCGTTAGGGCAGAACAGGCTCCAGTCACCGTTCTGCT 394110 Query 145947 TGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGC 146006 ||| | || ||| |||| || |||||||| || ||||| | || ||| | || || Sbjct 394109 CGACCCTCTTCATGAACAGGTCGGGCACCCAGAGGGCGTAGAACAGGTCCCTGGCCCTGA 394050 Query 146007 AATCCTCAGCACCCATGTTTCGCTTCAAATT--AAGCACACTATAGATGTCCGCGTGCCA 146064 || || ||| || ||| | | | | | || | | | | |||||||||||| Sbjct 394049 CCTCTTCCTTACCG-TGGTTCTTTCGGAGGTCGAGGAACTCGA-ACACGTCCGCGTGCCA 393992 Query 146065 CGGTTCAATATAGACGGCGAGGGCTCCT----TTTCGTTTGCCACCCTGGTCCACGTGAC 146120 ||| || | |||| |||| || || ||| ||| ||| |||||||| |||| | Sbjct 393991 CGGCTCGAGGTAGATTGCGAAAGCACCGGGCCTTTTGTT-GCCGCCCTGGTCGACGTACC 393933 Query 146121 GTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAG 146180 || ||||||| || || | || ||| || || || ||| || || || Sbjct 393932 TGGCCGTGTTGTTGAACACCCTCAGCATCGGGATGAGACCATTGGAAGTACCATTGGTCC 393873 Query 146181 AGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGT 146240 | || | ||| || || | || || | | |||| || | || || Sbjct 393872 CGCG-ATGTACGAGCCCGTAGAACGGATATTGTGGACGTGAAGACCGATACACCGGCAGT 393814 Query 146241 ACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG--CT 146298 ||| || || |||||| || || |||||||| || ||||| || || || Sbjct 393813 -CTTCGAGATCAATGCGCAGGTCTTAAGGGTATCGTAGATACCTTCAATACTGTCATCCT 393755 Query 146299 TCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAA 146358 || ||| ||| || |||||||||| || ||||| | || || ||||| ||||| Sbjct 393754 TC--ATGGCGACGAGGAAGCACGAGCTCAGCTGCGGCTGGGGGGTACCCGCGTTGAACAG 393697 Query 146359 CGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGAT-AGCGT 146417 |||||| ||||| || || | || | |||||| | | ||||| ||||| | | | Sbjct 393696 CGTCGGCGAAGCGTGGGTGAAGAACTTGCTGCTCATGAGCTCGTACGTCTCGATCACCTT 393637 Query 146418 CTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCT 146477 || || |||| ||||| || ||||| | ||||||||||||| |||||| || |||| || Sbjct 393636 CTCGA-TGTCCTCGCCGTGGATGCCTACGGCGACGCGCATGATCATGTGCTGCGGCCTCT 393578 Query 146478 CCGCCAC 146484 | || || Sbjct 393577 CGGCGAC 393571 >seq162 Length=94999 Score = 91.5 bits (100), Expect = 1e-13 Identities = 234/348 (67%), Gaps = 10/348 (3%) Strand=Plus/Plus Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 || || ||| ||||| | || || ||||| || || || |||| || ||| Sbjct 12629 ACCTTTGCCCAGCGTCTCGTCGCTTTTGCCGCCGTCGAAGGTATCTTCTTCAGTGGTTCA 12688 Query 46204 TTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAA 46262 || ||||||||||| | |||| || | || | |||||||||||||||| || ||| Sbjct 12689 TTCGCCGCCATCTTCTGGCTCAAGAAGCGTGGTC-TCATGCCCGGCCTGACCTTCTCCAA 12747 Query 46263 CGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACAC 46322 |||||| || || || |||||||| || || || |||||||| || ||| || | | Sbjct 12748 CGAGCTCATCTCCCGTGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCAGCCA 12807 Query 46323 TCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGT--TCAAGGAGGCGGTG 46380 || | || ||| | || || |||| | ||| ||| || ||||| || Sbjct 12808 TC---TCAACAACAGCCGAGC-AAGGAGGCCGT-CGAAGC-TGTCATCGTTGAGGCCGTT 12861 Query 46381 GCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCA 46440 | |||||| ||||||| |||||| || || || || || ||||||| ||||| Sbjct 12862 ACGATTGAGCAGGAGTTCCTTACGGAGGCTCTCCCGTGCGCTCTCTTGGGCATCAACGCC 12921 Query 46441 CAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTG 46488 || ||| | ||||||||||| || || ||||| ||||| ||| Sbjct 12922 AAGCTGATGAAGCAATACATCGAGTTCGTCGCCGACCGCCTGCTTGTG 12969 >seq4 Length=583001 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| |||||||| || ||| |||| | ||||||||||||||| ||||| ||||| ||| Sbjct 25170 TCCTCAAGCTGCTTTCC-GCGAAGATCAGACGCTGCTGGTCCGG-GGGATGCCTTCCTTG 25227 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || |||||| ||||| | || | || |||| |||||||| |||| ||| | | Sbjct 25228 TCTTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATG 25287 Query 131200 GTTTTACCGGTTAGAGT 131216 || || || || || || Sbjct 25288 GTCTTGCCCGTGAGGGT 25304 >seq346 Length=29424 Score = 86.0 bits (94), Expect = 6e-12 Identities = 156/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | || | ||| || ||||| ||||| |||||||| Sbjct 5364 CCACCACGCAGACGAAGGACAAGGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGAG 5305 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||| || |||||||| || ||| |||| | |||||||||||||| ||| Sbjct 5304 AGAGTCCTTCCGTCTTCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCCGGGGGG 5245 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || || || ||| | | || | || |||| ||||| | Sbjct 5244 ATACCCTCCTTATCCTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCAACC 5185 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || |||| ||| || || ||||||||||| Sbjct 5184 TCCAGCGTGATGGTCTTTCCAGTTAAAGTCTTCAC-AAAATCTGCAT 5139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010369134080