Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq162 188 8e-43 >seq162 Length=94999 Score = 188 bits (208), Expect = 8e-43 Identities = 380/560 (68%), Gaps = 9/560 (2%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||||| || | ||| ||||| || || || | ||| ||| ||| || | Sbjct 12793 GCAGGCAAAGTCGGTGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAG 12734 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | || || || ||||||||||| || || | || || |||| || || Sbjct 12733 GCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGCGGCGAATGAACCACTGAAGAA 12674 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT--TACTG 93268 |||||||| ||||| ||||| || || | ||| | |||||| | ||| | | | Sbjct 12673 GATACCTTCGACGGCGGCAAAAGCGACGAGACGCTGGGCAAA---GGTGGACTCGTCGTC 12617 Query 93269 CT-GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 || |||||| | ||||| ||||| || ||||| || || || | || |||||||| Sbjct 12616 CTCGATCCAGCGGATGGCCCAGTCGGCCTTCTTCTTGATGCACGGGATGGTCTCGATAGC 12557 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 || || || || |||| | | || || || |||||||| | ||||| || Sbjct 12556 GTCGAAGAGATAGGTGCGCTGCTTGGGCTCCTTGATATAGGTATCGATCAGGAGAGAGTA 12497 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 |||| || || | |||||||| || || || |||||||| || | ||||| | Sbjct 12496 GGTTTCCGAGTGAATGTTCTCCATCATGATCTGAAAGCCGTAGAAGCAGCGGGCTTCGGG 12437 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 ||||||||| || | || | || ||||| || || ||||| ||||| || || || Sbjct 12436 GATCTGCACCTCATTGCTGAAGCGCTGGACGAGGTTCTCGTTGACGATACCGTCAGAGGC 12377 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC---TTATC 93564 || || || || | | || ||||| | ||| || || || ||| || | Sbjct 12376 GGCGAAGAAGGCAAGGACGTGAGAGATAAAGTAGCGCTCGTCGTCGTTCAGCCTGTTGTT 12317 Query 93565 CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 ||| ||| ||||| || || ||||||| ||||||| | ||||| |||||||| || || Sbjct 12316 CCAGTCGCCGAGATCCTTGGAGAGATCGATTTCTTCGGCGGTCCAGAACGATGCCTCGGC 12257 Query 93625 TTTTTTGTACATATCCCATA 93644 || |||||||| | ||||| Sbjct 12256 CTTCTTGTACATTTGCCATA 12237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556857932166880