Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq346 141 2e-28 seq249 109 1e-18 >seq346 Length=29424 Score = 141 bits (156), Expect = 2e-28 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || |||||||| | || ||| || ||||| || ||||| | | Sbjct 4911 CCACCACGGAGGCGGAGAACGAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAG 4852 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || ||||| || ||||| |||||||| ||| || ||| Sbjct 4851 AGGGTGCGGCCATCCTCAAGCTGCTTTCCCGCAAAGATGAGACGCTGCTGA---TCCGGG 4795 Query 288367 --ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 || ||| ||| ||||||||| ||||| || ||||| || || | |||| ||| || | Sbjct 4794 GGATACCTCCTT-ATCCTGGATCTTCGCCTTGACGTTGTCAATCGTATCGGACGACTCAA 4736 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || || ||||| ||||| || || || ||||||||||| || |||||| Sbjct 4735 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCATT 4686 Score = 125 bits (138), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| || || |||| ||| || || ||||| ||||| |||| Sbjct 5137 CCGCCACGGAGACGAAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGAC 5078 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || |||||||| |||||||| ||| || ||| Sbjct 5077 AGAGTCCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGA---TCGGGG 5021 Query 288367 --ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 || ||||| || ||||| || ||||| || || || ||||| | || || || | Sbjct 5020 GAATGCCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCTATCGTGTCAGAGGACTCAA 4961 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||||||||| ||||| || || || ||||||||||| || ||||| Sbjct 4960 CCTCGAGCGTGATAGTCTTTCCCGTAAGCGTCTTGACGAA-ATTTGCAT 4913 >seq249 Length=58106 Score = 109 bits (120), Expect = 1e-18 Identities = 140/192 (73%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| |||||||||| |||||||| || | ||| | || ||||| ||||||||| Sbjct 56496 TTTTGGATGTTATAGTCGGACAGCGTGCGGCCATTTTCGAGCTGCTTTCCGGCGAAGATC 56437 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 |||||||| || ||||| ||| || || ||||| || || || | || | Sbjct 56436 AGACGCTGCTGGTCGAGCGGGATGTATTCCTTGTCTTGGATCTTGGCCTTGATATTGTTG 56377 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || | || || || || ||||| ||||| ||||| || || || ||||||||||| Sbjct 56376 ATGGTGTCAGAGGACTCAACCTCGAGGGTGAT-GTCTTGCCCGTGAGGGTCTTGACGAAG 56318 Query 288466 ATCTGCATTATG 288477 ||||||||| || Sbjct 56317 ATCTGCATTTTG 56306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179648172899336