Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq346 118 1e-21 seq269 91.5 2e-13 >seq346 Length=29424 Score = 118 bits (130), Expect = 1e-21 Identities = 145/193 (75%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || || ||||| | ||||||||| |||| || ||||||||||| ||||| Sbjct 5102 CTCCTTCTGGATGTTATAATCGGACAGAGTCCGGCCGTCCTCGAGCTGCTTACCGGCGAA 5043 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| |||||||| |||| || | || ||||||||| ||| | || | |||| Sbjct 5042 GATGAGACGCTGCTGATCGG-GGGAATGCCTTCCTTGTCC-TGAATCTTCGCCTTGACAT 4985 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || |||| |||||| || || ||||| |||||||| | Sbjct 4984 TGTCTATCGTGTCAGAGGACTCAACCTCGAGCGTGATAGTCTTTCCCGTAAGCGTCTTGA 4925 Query 42196 CAAAGATTTGCAT 42208 | || |||||||| Sbjct 4924 CGAA-ATTTGCAT 4913 Score = 111 bits (122), Expect = 2e-19 Identities = 142/192 (74%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| |||||||||||||||| ||||||| |||| || ||||||||||||||||| Sbjct 5328 TCCTTCTGAATATTGTAATCAGAGAGAGTCCTTCCGTCTTCCAGCTGCTTACCAGCGAAG 5269 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || || ||||||||||| | || | | |||||| ||| ||| | || | || | | Sbjct 5268 ATAAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTATCC-TGAATCTTGGCCTTCACATT 5210 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| || || || || | ||||||||| || || |||| ||||| || Sbjct 5209 GTCGATGGTGTCGGAAGACTCAACCTCCAGCGTGATGGTCTTTCCAGTTAAAGTCTTCAC 5150 Query 42197 AAAGATTTGCAT 42208 ||| || ||||| Sbjct 5149 AAA-ATCTGCAT 5139 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || | || || || | || || |||||||| || || || Sbjct 4875 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCCGCAAAG 4816 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| |||||||| || | || | | |||||| ||| ||| || |||| ||| Sbjct 4815 ATGAGACGCTGCTGATCCGGGGG-ATAC-CTCCTTATCCTGGATCTTCGCCTTGA-CGTT 4759 Query 42138 GCCAC-CGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | || ||| ||| ||| || || || | |||||||| |||||||| || ||||| || Sbjct 4758 GTCAATCGTATCGGACGACTCAACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 4699 Query 42197 AAAGATTTGCATT 42209 |||||||||||| Sbjct 4698 GAAGATTTGCATT 4686 >seq269 Length=51757 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/186 (72%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || ||||||||||||| || |||| |||| || ||||| ||||| ||||| Sbjct 21067 TCCTTCTGGATATTGTAATCAGAAAGGGTCCTTCCGTCCTCAAGCTGTTTACCGGCGAAG 21008 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| || |||||||||| || | | ||| || ||| || | || | | ||| Sbjct 21007 ATGAGACGTTGCTGGTCGG-GGGGATACACTCATTATCC-TGGATCTTAGACCTAACGTT 20950 Query 42138 GCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 ||| ||| |||| || || || |||| |||||| | || ||||| |||||||| || Sbjct 20949 GCCTACCATGTCCGAGGACTCAACCTCGAGCGTGATAGCCTTTCCCGTAAGCGTCTTGAC 20890 Query 42197 AAAGAT 42202 || || Sbjct 20889 GAAAAT 20884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543210002454080