Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 2e-12 seq346 82.4 7e-11 >seq2 Length=859439 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/153 (73%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 123605 CGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAG 123664 ||| || ||||| ||||||||||| ||||| ||||||||||||| ||| | ||| |||| Sbjct 394277 CGAGACGGGAACCCCGTACATGCTGTACAAGGACGCCTGCAACAAGAAGAGCAACCAGAA 394336 Query 123665 CAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGC 123724 ||| |||| || || || | ||| || ||| | || || |||| ||| || | Sbjct 394337 GAACCTGGGCACGATCAAGAGCTCTAACCTGTGCACGGAGATCGTCGAGTACTCCG-CCC 394395 Query 123725 CGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT 123757 |||| | || |||||||| || | || ||||| Sbjct 394396 CGATGAGGTAGCCGTGTGCAACCTCGCGTCGAT 394428 >seq346 Length=29424 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/217 (69%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || |||||||| || ||||| ||||| || || | || ||| Sbjct 5346 ACAAGGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGAGAGAGTCCTTCCGTCTTCC 5287 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || ||| | || | || ||||||||||| || || || || ||||| ||| Sbjct 5286 AGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTATCCTGA 5227 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || || | || | ||||||||||||||| || || || || | || || Sbjct 5226 ATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCCAGCGTGATGGTCTTT 5167 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || |||| ||| || || ||||| ||||| ||| || Sbjct 5166 CCAGTTAAAGTCTTCAC-AAAATCTGCATACCGCCAC 5131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000872183520