Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq346 147 5e-30 seq249 104 6e-17 >seq346 Length=29424 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| || || || ||||| || | ||||| |||| | ||||||||| ||| Sbjct 5349 AGGACAAGGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGAGAGAGTCCTTCCGTCT 5290 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || |||||||| || |||||||||||||| || || || ||| Sbjct 5289 TCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTATCC 5230 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| |||| |||||| | | || || |||| |||||| ||| Sbjct 5229 TGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCCAGCGTGATGGTC 5170 Query 199598 TTACCCGTGAGAGTTTTCACAAAA 199621 || || || | ||| ||||||||| Sbjct 5169 TTTCCAGTTAAAGTCTTCACAAAA 5146 Score = 127 bits (140), Expect = 5e-24 Identities = 153/207 (74%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| || || |||||||| |||| ||| || || | || ||||| || || Sbjct 5122 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAGAGTCCGGCCGTCC 5063 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||||||||||||||| | ||| ||| ||||| ||| Sbjct 5062 TCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGAT-CGGGGGAATGCCTTCCTTGTCC 5004 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || || | ||||| | | || || || | |||||| ||| Sbjct 5003 TGAATCTTCGCCTTGACATTGTCTATCGTGTCAGAGGACTCAACCTCGAGCGTGATAGTC 4944 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATT 199624 || ||||| || || || || ||| || Sbjct 4943 TTTCCCGTAAGCGTCTTGACGAAATTT 4917 Score = 104 bits (114), Expect = 6e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || ||||| || ||||| |||| ||||||||| | | || | ||||| Sbjct 4896 AGAACGAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCC 4837 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| || ||||||||||||||||| ||||| || ||| || ||| Sbjct 4836 TCAAGCTGCTTTCCCGCAAAGATGAGACGCTGCTGATCCGG-GGGATACCTCCT-TATCC 4779 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | || || | | || || || | ||||| ||| Sbjct 4778 TGGATCTTCGCCTTGACGTTGTCAATCGTATCGGACGACTCAACCTCAAGGGTGATGGTC 4719 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || ||||| Sbjct 4718 TTGCCCGTGAGGGTCTTGACGAAGATTTG 4690 >seq249 Length=58106 Score = 104 bits (114), Expect = 6e-17 Identities = 148/203 (73%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTT-GTAGTCAGCCAAAGTCCTTCCATC 199476 ||||| |||||||| || |||||||| |||| ||| |||||| || || | ||||| Sbjct 56728 AGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTTGTAGTCGAACAGCGTGCGGCCATC 56669 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT-CTCGCT 199535 ||| |||||||||||||||||||| ||||||| || ||| || || |||| ||||| Sbjct 56668 TTCGAGCTGCTTTCCGGCGAAGATCAGACGCTACTAGTCGGGCGGGATGCCTTCCTCGC- 56610 Query 199536 CCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 ||| |||||| ||| | |||| ||||| | | || || || | ||||| | Sbjct 56609 CCTAAATCTTAGCCTTGATACTGTCGATAGTGTCGGAAGACTCAACCTCGACGGTGATGG 56550 Query 199596 -TCTTACCCGTGAGAGTTTTCAC 199617 | |||| |||||| || || || Sbjct 56549 TTTTTACTCGTGAGGGTCTTGAC 56527 Score = 93.3 bits (102), Expect = 1e-13 Identities = 157/222 (71%), Gaps = 14/222 (6%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || |||||||| || |||| ||||||| ||| ||||| | || || | |||| ||| Sbjct 56515 ACGAGGTGGAGGGTA-ACTC-TTTTGGATGTTATAGTCGGACAGCGTGCGGCCATTTTCG 56458 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGT----CCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||||||||||| ||||||||||||| | ||| ||||||| || Sbjct 56457 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGAGCGGGATGTATTCCTT----GTC 56402 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| | | || |||||| | | || || || | ||||| || Sbjct 56401 TTGGATCTTGGCCTTGATATTGTTGATGGTGTCAGAGGACTCAACCTCGAGGGTGAT-GT 56343 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGC 199638 ||| |||||||| || || || || || || |||||| || Sbjct 56342 CTTGCCCGTGAGGGTCTTGACGAAGATCTG---CATTTTGGC 56304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178915376767604