Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq346 114 1e-20 seq249 105 8e-18 >seq346 Length=29424 Score = 114 bits (126), Expect = 1e-20 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| ||| ||||| ||||| |||||||| || || ||||| | || || Sbjct 4893 ACGAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCA 4834 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || || | |||||||| || | || | | |||||| ||| | Sbjct 4833 AGCTGCTTTCCCGCAAAGATGAGACGCTGCTGATCCGGGGG-ATAC-CTCCTTATCCTGG 4776 Query 46505 ATCTTCTTCTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| ||| | || ||| ||| ||| || || || | |||||||| || Sbjct 4775 ATCTTCGCCTTGA-CGTTGTCAATCGTATCGGACGACTCAACCTCAAGGGTGATGGTCTT 4717 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||||| || || || || |||||||||||| Sbjct 4716 GCCCGTGAGGGTCTTGACGAAGATTTGCATT 4686 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| || || ||||| ||||| || |||| ||||||||||| |||||||| Sbjct 5102 CTCCTTCTGGATGTTATAATCGGACAGAGTCCGGCCGTCCTCGAGCTGCTTACCGGCGAA 5043 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| |||| || | || ||||||||| |||||| ||||| | Sbjct 5042 GATGAGACGCTGCTGATCGG-GGGAATGCCTTCCTTGTCCTGAATCTTCGCCTTGACATT 4984 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || || || | |||||| || || ||||| ||||| || || Sbjct 4983 GTCTATCGTGTCAGAGGACTCAACCTCGAGCGTGATAGTCTTTCCCGTAAGCGTCTTGAC 4924 Query 46582 AAAGATTTGCAT 46593 || |||||||| Sbjct 4923 GAA-ATTTGCAT 4913 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || |||||||| || || ||||| | |||| || |||||||| || ||||| Sbjct 5328 TCCTTCTGAATATTGTAATCAGAGAGAGTCCTTCCGTCTTCCAGCTGCTTACCAGCGAAG 5269 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | |||||||||||| | || | | |||||| ||| ||||| ||| | | Sbjct 5268 ATAAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTATCCTGAATCTTGGCCTTCACATTG 5209 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| || || || |||| ||||||||| || || || | || || ||| Sbjct 5208 TCGATGGTGTCGGAAGACTCAACCTCCAGCGTGATGGTCTTTCCAGTTAAAGTCTTCACA 5149 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 5148 AA-ATCTGCAT 5139 >seq249 Length=58106 Score = 105 bits (116), Expect = 8e-18 Identities = 140/193 (73%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 46405 CTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATAT 46464 ||||||||| || |||||||| || ||||| | | ||||||||||| |||||||| || Sbjct 56497 CTTTTGGATGTTATAGTCGGACAGCGTGCGGCCATTTTCGAGCTGCTTTCCGGCGAAGAT 56438 Query 46465 CAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGC 46524 || |||||||||||| ||| | | |||||||| |||||| ||||| | Sbjct 56437 CAGACGCTGCTGGTCGAGCGGGATGTATTCCTTGTCTTGGATCTTGGCCTTGATATTGTT 56378 Query 46525 CACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAA 46584 | ||||| || || || || | ||||| || |||||||| || || || || || Sbjct 56377 GATGGTGTCAGAGGACTCAACCTCGAGGGTGAT-GTCTTGCCCGTGAGGGTCTTGACGAA 56319 Query 46585 GATTTGCATTTTG 46597 ||| ||||||||| Sbjct 56318 GATCTGCATTTTG 56306 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/163 (72%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATT-GTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGA 46460 |||||| ||||| || ||||||| | || ||||| | || ||||||||||| ||||||| Sbjct 56708 CTCCTTCTGGATGTTTGTAGTCGAACAGCGTGCGGCCATCTTCGAGCTGCTTTCCGGCGA 56649 Query 46461 ATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG 46520 | |||| |||| || ||||| ||| | || |||| | || ||||| ||||| Sbjct 56648 AGATCAGACGCTACTAGTCGGGCGGGATGCCTTCCTCGCCCTAAATCTTAGCCTTGATAC 56589 Query 46521 TCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 | | | |||||| || || || || || ||||||||||| Sbjct 56588 TGTCGATAGTGTCGGAAGACTCAACCTCGACGGTGATGGTTTT 56546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565235489022240