Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq346 149 1e-30 seq249 96.9 8e-15 seq3 91.5 3e-13 >seq346 Length=29424 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| ||||| || || |||||||||||||| | ||||| || || ||||| Sbjct 5346 ACAAGGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGAGAGAGTCCTTCCGTCTTCC 5287 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| ||||||||||| || || ||||| || || || || || || || ||| Sbjct 5286 AGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTATCCTGA 5227 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || || |||||||| ||| || || || || || | |||||| Sbjct 5226 ATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCCAGCGTGATGGTCTTT 5167 Query 195112 CCTGTCAAAGTTTTTACGAA 195131 || || ||||| || || || Sbjct 5166 CCAGTTAAAGTCTTCACAAA 5147 Score = 140 bits (154), Expect = 7e-28 Identities = 158/209 (76%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| |||||||| || || || || ||||||| ||||| | || || ||| Sbjct 5119 ACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAGAGTCCGGCCGTCCTCG 5060 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| || || || || || || ||||||||||| ||||| ||| Sbjct 5059 AGCTGCTTACCGGCGAAGATGAGACGCTGCTGATC-GGGGGAATGCCTTCCTTGTCCTGA 5001 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || || ||||| || || || || || || | |||||| Sbjct 5000 ATCTTCGCCTTGACATTGTCTATCGTGTCAGAGGACTCAACCTCGAGCGTGATAGTCTTT 4941 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 4940 CCCGTAAGCGTCTTGACGAA-ATTTGCAT 4913 Score = 96.9 bits (106), Expect = 8e-15 Identities = 103/134 (77%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| |||||||| || || ||||| || || || ||||| |||||| | ||||| Sbjct 4504 CCATCTTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCGGGAGGA-TCCCTTCC 4446 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| || || |||||| || || ||||||||||| ||| || ||||| || Sbjct 4445 TTGTCTTGGATCTTAGCCTTGACATTATCGATGGTGTCCGAGGATTCGACCTCAAGAGT- 4387 Query 195103 ACCGTCTTTCCTGT 195116 |||||||| || Sbjct 4386 --GGTCTTTCCGGT 4375 >seq249 Length=58106 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || || |||||||| || | || || |||| || || | |||| ||| Sbjct 56516 AACGAGGTGGAGGGTA-ACTCTTTTGGA-TGTTATAGTCGGACAGCGTGCGGCCATTTTC 56459 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| || || || ||||| | || ||| ||| |||||||| Sbjct 56458 GAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGAGCGGGATGTATTCCTTGTCTTG 56399 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||| || | |||||||| || || || || ||||| | ||||| Sbjct 56398 GATCTTGGCCTTGATATTGTTGATGGTGTCAGAGGACTCAACCTCGAGGGTGA-TGTCTT 56340 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || | || || ||||| | ||||||| Sbjct 56339 GCCCGTGAGGGTCTTGACGAAGATCTGCATTT 56308 >seq3 Length=759389 Score = 91.5 bits (100), Expect = 3e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 194962 TTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGT 195021 |||||||||| ||||| | || |||||||||||||| |||||||| || || || Sbjct 395835 TTGTAATCGGACAGAGTCCGGCCGCTCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGC 395776 Query 195022 TGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT 195079 | ||| || |||||| |||| | ||| ||||| ||| ||||||||| || || |||| Sbjct 395775 TAGTCCGGTGGAATGTCTTCCTAGTCCTGAATCTTTGCCTTGACGTTGTCTATCGTGT 395718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109475743324004