Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq346 107 1e-18 seq249 102 5e-17 >seq346 Length=29424 Score = 107 bits (118), Expect = 1e-18 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| |||||||| ||| |||| |||| || || |||||||| || ||| Sbjct 4875 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCCGCAAAG 4816 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || || ||||| || | || || ||||| || | || || |||||| Sbjct 4815 ATGAGACGCTGCTGATCCGGGGGATACC--TCCTTATCCTGGATCTTCGCCTTGACGTTG 4758 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | |||| || | ||| || |||| ||| |||||||| |||||||||||||| || Sbjct 4757 TCAATCGTATCGGACGACTCAACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 4698 Query 34967 AAGATCTGCAT 34977 ||||| ||||| Sbjct 4697 AAGATTTGCAT 4687 Score = 105 bits (116), Expect = 4e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| |||| ||||||||| |||||||| || || || | || | || Sbjct 5122 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAGAGTCCGGCCGTCC 5063 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || || ||||| || | || | || |||||||| Sbjct 5062 TCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATC-GGGGGAATGCCTTCCTTGTCC 5004 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| |||||| ||| || ||| || || | || || ||| Sbjct 5003 TGAATCTTCGCCTTGACATTGTCTATCGTGTCAGAGGACTCAACCTCGAGCGTGATAGTC 4944 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || ||||| || || || ||||| Sbjct 4943 TTTCCCGTAAGCGTCTTGACGAA-ATTTGCAT 4913 >seq249 Length=58106 Score = 102 bits (112), Expect = 5e-17 Identities = 139/190 (73%), Gaps = 3/190 (2%) Strand=Plus/Minus Query 34789 CTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGAT 34848 ||| || ||||||||||| || || |||| ||| || || ||||||||||||||||| Sbjct 56497 CTTTTGGATGTTATAGTCGGACAGCGTGCGGCCATTTTCGAGCTGCTTTCCGGCGAAGAT 56438 Query 34849 CAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGC 34908 ||| || |||||||| |||| | |||||||| | || || |||| || Sbjct 56437 CAGACGCTGCTGGTCGAGCGGGATGTATTCCTTGTCTTGGATCTTGGCCTTGA-TATTGT 56379 Query 34909 T-ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | || | ||| || ||| || || | ||| || ||||| |||||||||||||| || | Sbjct 56378 TGATGGTGTCAGAGGACTCAACCTCGAGGGTGAT-GTCTTGCCCGTGAGGGTCTTGACGA 56320 Query 34968 AGATCTGCAT 34977 |||||||||| Sbjct 56319 AGATCTGCAT 56310 Score = 87.8 bits (96), Expect = 1e-12 Identities = 145/206 (70%), Gaps = 10/206 (5%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTA-TAGTCCGATAGGCTGCGCTCATC 34824 ||||| ||||| | |||| ||||||||| ||||| ||||| | || |||| |||| Sbjct 56728 AGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTTGTAGTCGAACAGCGTGCGGCCATC 56669 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || |||||||||||||||||||| || | || ||| |||| | || |||| | | Sbjct 56668 TTCGAGCTGCTTTCCGGCGAAGATCAGACGCTACTAGTCGGGCGGGATGCCTTCCTCGCC 56609 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || || ||| || ||||| || | ||| || || ||||| | Sbjct 56608 CTAAATCTTAGCCTT----GATACTGTCGATAGTGTCGGAAGACTCAACCTCGACGGTGA 56553 Query 34941 TGGTCTTT-CCCGTGAGGGTCTTTAC 34965 |||| ||| | |||||||||||| || Sbjct 56552 TGGTTTTTACTCGTGAGGGTCTTGAC 56527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691164615028