Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq162 123 3e-23 >seq162 Length=94999 Score = 123 bits (136), Expect = 3e-23 Identities = 368/560 (66%), Gaps = 12/560 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| ||||| || || ||||| || | || | ||||| || || || || Sbjct 12793 GCAGGCAAAGTCGGTGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAG 12734 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| ||||||||||| |||||||| || ||||| || || || ||| ||||| Sbjct 12733 GCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGCGGCGAATGAACCACTGAAGAA 12674 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTA----TCATTAT 39791 ||| ||||| || || ||||| || || || | || | || || | || | | Sbjct 12673 GATACCTTCGACGGCGGCAAAAGCGACGAGACGCTGGGC-AAAGGTGGACTCGTCGTCCT 12615 Query 39792 GTATCCA-CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 ||||| | || ||||| || || |||||||| | || || || || || ||||| Sbjct 12614 CGATCCAGCGGATG-GCCCAGTCGGCCTTCTTCTTGATGCACGGGATGGTCTCGATAGCG 12556 Query 39851 TTAAAGAGATA-ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 | |||||||| || | | | || || | ||| ||||| || | ||| || Sbjct 12555 TCGAAGAGATAGGTGCGCTGC-TTGGGCTCCTTGATATAGGTATCGATCAGGAGAGAGTA 12497 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 |||| || || ||||| || ||| |||||||| ||||| || || | ||||| | Sbjct 12496 GGTTTCCGAGTGAATGTTCTCCATCATGATCTGAAAGCCGTAGAAGCAGCGGGCTTCGGG 12437 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 || || ||||| | || | | | | || || || || || || ||| || Sbjct 12436 GATCTGCACCTCATTGCTGAAGCGCTGGACGAGGTTCTCGTTGACGATACCGTCAGAGGC 12377 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATT 40086 ||| || || || | || || ||||| || || ||| ||| || || Sbjct 12376 GGCGAAGAAGGCAAGGACGTGAGAGATAAAGTAGCGCTCGTCGTCGTTCAGCCTGTTGTT 12317 Query 40087 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 |||||| || ||| || || | ||| | |||||| || ||||| ||||| ||||| || Sbjct 12316 CCAGTCGCCGAGATCCTTGGAGAGATCGATTTCTTCGGCGGTCCAGAACGATGCCTCGGC 12257 Query 40147 CTTTTTGTACATGTTCCATA 40166 ||| |||||||| | ||||| Sbjct 12256 CTTCTTGTACATTTGCCATA 12237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686905262419680