Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 271 8e-68 seq162 120 3e-22 >seq2 Length=859439 Score = 271 bits (300), Expect = 8e-68 Identities = 546/792 (69%), Gaps = 27/792 (3%) Strand=Plus/Plus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACG 53233 |||| ||| ||| | | |||||||||||||| | || |||||||| || ||| | | Sbjct 393577 GAGAGGCCGCAGCACATGATCATGCGCGTCGCCGTAGGCATCCACGGCGAGGACATCGAG 393636 Query 53234 CGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACC 53293 || ||||||||||| | |||||| |||| ||| || ||||| |||| || Sbjct 393637 AAGGTGATCGAGACGTACGAGCTCATGAGCAGCAAGTTCTTCACCCACGCTTCGCCGACG 393696 Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATG 53350 ||||||||||| ||||| || || ||| || |||| ||||||| || || ||| Sbjct 393697 CTGTTCAACGCGGGTACCCCCCAGCCGCAGCTG---AGCTCGTGCTTCCTCGTCGCCATG 393753 Query 53351 AAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAG 53410 ||||||||| || || || |||||||| || || ||| || || ||||| ||| Sbjct 393754 AAGGATGACAGTATTGAAGGTATCTACGATACCCTTAAGACCTGCGCATTGATCTCGAAG 393813 Query 53411 TGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAG 53470 | |||| ||||||| | ||| | || ||||| | | ||| | ||| | Sbjct 393814 ACTGCCGGTG-TATCGGTCTTCACGTCCACAATATCCGTTCTACGGGCTCGTACATCGCG 393872 Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 || || || || || |||| || | || ||||| | || ||||||||||||||| Sbjct 393873 GG-ACCAATGGTACTTCCAATGGTCTCATCCCGATGCTGAGGGTGTTCAACAACACGGCC 393931 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGG---GGT-CGTTCGCCATCTACCTCGA 53586 |||||||| ||||||| || || |||| ||| | ||||| ||||||||||| Sbjct 393932 AGGTACGTCGACCAGGGCGGCAACAA----AAGGCCCGGTGCTTTCGCAATCTACCTCGA 393987 Query 53587 GCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGA 53646 |||||||||||| ||| | | ||||| ||||| || || ||| || ||| | ||||| Sbjct 393988 GCCGTGGCACGCGGACGTGTTCGAGTTCCTCGACCTCCGAAAGAACCACGGTAAGGAAGA 394047 Query 53647 GATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGG 53705 | | | | | |||||||| ||| || || ||| | || ||||| |||||| | | || Sbjct 394048 GGTCAGGGCCAGGGACCTGTTCTAC-GCCCTCTGGGTGCCCGACCTGTTCATGAAGAGGG 394106 Query 53706 TGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTG 53765 | ||| || ||| || ||| |||| | ||||| |||||| ||||||| || || Sbjct 394107 TCGAGCAGAACGGTGACTGGAGCCTGTTCTGCCCTAACGAGGCTACCGGCCTTTCGGATG 394166 Query 53766 TCTACGGTGAGGAGTTTAACGAGATGTATCGGACG-TACGCAGTTCAGGGCC-GCTACAA 53823 | ||||| |||||||| | ||| | || | || |||| || | ||| || | Sbjct 394167 TTTACGGCGAGGAGTTCGA-GAGCTCTA-CACCCGCTACG-AGAAGACCGCCGGCCTCGC 394223 Query 53824 G---AAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGAC 53880 | | || |||||||||| || | || |||| || || || ||| ||||| Sbjct 394224 GCGCAGGACCGTCAAGGCGC-AGAAGCTGGGTATGCCATTCTGGAGGCGCAGACCGAGAC 394282 Query 53881 GGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACAT 53940 |||||| ||||||||| |||||||| | |||| |||||||||||||||||||| | Sbjct 394283 GGGAACCCCGTACATGCTGTACAAGGACGCCTGCAACAAGAAGAGCAACCAGAAGAACCT 394342 Query 53941 CGGCGTCATCAA 53952 ||| ||||| Sbjct 394343 GGGCACGATCAA 394354 Score = 102 bits (112), Expect = 9e-17 Identities = 303/457 (66%), Gaps = 19/457 (4%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | ||||||||| | ||||| ||||| ||||| ||||| || ||| | |||||| | Sbjct 394856 GGCATGCGCAACTCC-TCCTCGTCGCGCCCATGCCTACCGCTTCCACGTCCCAGATCCTC 394914 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 || ||||||| ||||| || |||||| ||||||||||| ||||| ||| || Sbjct 394915 GGTTTCAACGAGTGCTTCGAACCCTACACGTCCAACATCTACTCCCGCCGCGTCCTCGCC 394974 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCT-GCAGAA---GATCAACAA 55653 || || || || | ||| | || | |||||||| | ||| | || Sbjct 394975 GGCGAATTCCAGATCGTAAACCCGTGGCTGCTAAAGGACCTCGTCGAACTGGGTCTC--- 395031 Query 55654 GTGGAACCCGCAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCT- 55710 |||| | | || |||| || || | || || || ||| ||||||| | Sbjct 395032 -TGGAGCGATAACATGAAGAACCGCATCATCGCCG--ACAACGGTTCCATCCAGAACATC 395088 Query 55711 --GGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAG 55768 | | || || | | || | | ||| ||| || |||||||| |||| || Sbjct 395089 CCGAACATACCCAAGGACATAAAATCGCTGTACAAGACCGTCTGGGAGATCTCACAAAA- 395147 Query 55769 AGTC-TGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAA 55827 ||| | || |||||| || || | |||| |||||||||| |||||| ||||| Sbjct 395148 AGTAATCATCGACATGGCGGCAGACAGGTCCGCGTTCATCGACCAGAGCCAGTCGCTGAA 395207 Query 55828 CATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAA 55887 |||| ||| | | || || || || || | || |||||||| ||||| ||||| Sbjct 395208 CATCCACATTAAAGACCCAACATGGGTAAACTTACG-TCTATGCACTTCTACGGCTGGAA 395266 Query 55888 GAAGGGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 |||||| ||||||||||| ||||||||| | || ||| Sbjct 395267 GAAGGGTCTCAAGACGGGAATGTACTATTTACGCACC 395303 >seq162 Length=94999 Score = 120 bits (132), Expect = 3e-22 Identities = 275/407 (68%), Gaps = 9/407 (2%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || ||||||||||| | ||| |||||||| ||| |||||||||||| Sbjct 12735 AGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGCGGCGAATGAACCACTGAAG 12676 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC 74924 ||||| |||||||| ||||| ||||| || || || || || |||| | | ||| Sbjct 12675 AAGATACCTTCGACGGCGGCAAAAGCGACGAGACGCTGGGC-AAAGGTGGACTCGTCGTC 12617 Query 74925 ----ATCCA-AGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATC 74978 ||||| | || ||||| || || || |||| ||| |||| || ||||| Sbjct 12616 CTCGATCCAGCGGATG-GCCCAGTCGGCCTTCTTCTTGA-TGCACGGGATGGTCTCGATA 12559 Query 74979 GCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAG 75038 || | |||||| | || | ||| ||||||| | || |||| || ||| Sbjct 12558 GCGTCGAAGAGATAGGTGCGCTGCTTGGGCTCCTTGATATAGGTATCGATCAGGAGAGAG 12499 Query 75039 TACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCT 75098 || || ||||| ||||| ||| | | ||| | ||||||| | || || || Sbjct 12498 TAGGTTTCCGAGTGAATGTTCTCCATCATGATCTGAAAGCCGTAGAAGCAGCGGGCTTCG 12439 Query 75099 GCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAG 75158 | ||||| || || || || | | ||| ||||| ||||||| ||||| ||| Sbjct 12438 GGGATCTGCACCTCATTGCTGAAGCGCTGGACGAGGTTCTCGTTGACGATACCGTCAGAG 12379 Query 75159 GCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTC 75205 |||||||| || || || || |||||||| |||||| ||||| Sbjct 12378 GCGGCGAAGAAGGCAAGGACGTGAGAGATAAAGTAGCGCTCGTCGTC 12332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213181837600