Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: fungal_20sp._20ARF18_20[genbank_20GCA_5F002224055.1_202017-07-24] 412 sequences; 46,394,168 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq346 93.3 4e-14 seq269 82.4 7e-11 >seq346 Length=29424 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || |||||||||| || || || |||| || ||||| Sbjct 5113 TGAAGGGTGGACTCCTTCTGGATGTTATAATCGGACAGAGTCCGGCCGTCCTCGAGCTGC 5054 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || ||||||||||| |||| ||| | || || |||||| || ||| Sbjct 5053 TTACCGGCGAAGATGAGACGCTGCTGATCGG-GGGAATGCCTTCCTTGTCCTGAATCTTC 4995 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | ||| || ||||| || || | ||||||| | |||||||| Sbjct 4994 GCCTTGACATTGTCTATCGTGTCAGAGGACTCAACCTCGAGCGTGATAGTCTTTCCCGTA 4935 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || || |||||||| Sbjct 4934 AGCGTCTTGACGAA-ATTTGCAT 4913 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || || || || | || || || | || |||||||| || |||||||| Sbjct 4875 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCCGCAAAG 4816 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || ||||||||||| || | ||| | | ||| || ||| ||| ||| |||| ||| Sbjct 4815 ATGAGACGCTGCTGATCCG-GGGGATAC-CTCCTTATCCTGGATCTTCGCCTTGA-CGTT 4759 Query 39214 G-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | ||||||| |||||| || || | ||||| | || ||||| || || || || Sbjct 4758 GTCAATCGTATCGGACGACTCAACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 4699 Query 39273 AAAGATTTGCAT 39284 ||||||||||| Sbjct 4698 GAAGATTTGCAT 4687 >seq269 Length=51757 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/186 (71%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || ||||| ||||| | ||| || | | |||| ||||||||||| || || || Sbjct 21067 TCCTTCTGGATATTGTAATCAGAAAGGGTCCTTCCGTCCTCAAGCTGTTTACCGGCGAAG 21008 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || ||||| |||||||||| ||| | | ||| || ||| ||| || | | ||| Sbjct 21007 ATGAGACGTTGCTGGTCGG-GGGGATACACTCATTATCCTGGATCTT-AGACCTAACGTT 20950 Query 39214 GCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 ||| ||| | || ||||| || || | ||||||| |||||||| ||||| || || Sbjct 20949 GCCTACCATGTCCGAGGACTCAACCTCGAGCGTGATAGCCTTTCCCGTAAGCGTCTTGAC 20890 Query 39273 AAAGAT 39278 || || Sbjct 20889 GAAAAT 20884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429543443144156